| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2386 |
|---|
| Symbol | |
|---|
| ID | 5108226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2632132 |
|---|
| End bp | 2633454 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640503630 |
|---|
| Product | recombination factor protein RarA |
|---|
| Protein accession | YP_001187874 |
|---|
| Protein GI | 146307409 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.010148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATCTGT TCGGCCGCCA ACCCGTCGCG CAGCCTCTGG CTGCCCGTTT GCGTGCCACC
AGCCTGGACG AGTACGTCGG GCAGGAGCAC GTGCTGGCGC CGGGCAAGCC GCTGCGTGAG
GCGCTGGAGC AGGGCGCGCT GCATTCGATG ATCTTCTGGG GGCCGCCCGG CGTGGGCAAG
ACCACCCTGG CGCGCCTGCT GGCCAAGGTC ACCGACGCGC ATTTCGAGAC CATCTCGGCC
GTGCTTTCGG GGGTCAAGGA GATCCGCCAG GCCGTCGAGG TCGCCCAGCA GCACGCCGCC
CAGTACGGTC GGCGCACCAT CCTCTTCGTC GACGAGGTGC ACCGCTTCAA CAAGAGTCAG
CAGGACGCCT TTCTGCCCTA TGTGGAAGAC GGCACGCTGA TCTTCATCGG CGCCACCACC
GAGAATCCCT CGTTCGAGCT GAACAACGCG CTGCTGTCGC GCGCCCGCGT CTATGTGCTG
AAAAGCCTGG ATGAGGCGGC GATGCGCAAG CTGGTCAATC GCGCCTTGAC CGATCCGAAA
GGCCTGGGCG AGCGCCATCT CAGCCTGCCG GACGAGGCCT TTCAGATCCT TCTGGCTGCC
GCGGATGGCG ACGGGCGCCG CCTGCTCAAC TTCCTCGAGA ATGCCGCCGA CCTGGCCGAG
GACGGTGGCG AAATCGGCGT CGAGCTGCTG CAGAACCTGC TGGGCGACAG CCGCCGCCGC
TTCGACAAGG GCGGTGAGGC GTTCTATGAC CAGATTTCCG CCCTGCACAA GTCGGTGCGC
GGTTCCAATC CGGACGGCGC GCTGTACTGG TACGCACGCA TGCTCGATGG CGGCTGCGAC
CCGCTCTATA TCGCCCGGCG CGTGGTGCGC ATGGCCAGCG AGGACATCGG CAACGCCGAC
CCGCGCGCCC TGACCCTGTG CCTCAACGCC TGGGATGTGC AGGAGCGTCT GGGCAGCCCC
GAGGGCGAGC TGGCGGTGGC TCAGGCGATT GTCTATCTGG CCTGCGCGCC GAAGAGCAAC
GCGGTGTACA TGGCCTTCAA GGCGGCCATG CGCGATGCCG CCGAGCAGGG CTCGCAGGAG
GTGCCGCTGC ACCTGCGCAA TGCGCCGACC AAGCTGATGA AGCAGCTTGG CTATGGTGAG
GAGTACCGCT ACGCCCATGA CGAGCCGGAT GCCTACGCCG CTGGCGAGGA CTACTTTCCC
GAAGCCCTGG AGCCGCGCCA GTACTACGAC CCGGTGCCGC GCGGCCTGGA GCTGAAGATT
CGCGACAAAC TGCAGCACCT GCGCAATCTG GACGCCAGCA GCCCGAGGCA GAGAAGAAAA
TGA
|
|---|
| Protein sequence | MDLFGRQPVA QPLAARLRAT SLDEYVGQEH VLAPGKPLRE ALEQGALHSM IFWGPPGVGK
TTLARLLAKV TDAHFETISA VLSGVKEIRQ AVEVAQQHAA QYGRRTILFV DEVHRFNKSQ
QDAFLPYVED GTLIFIGATT ENPSFELNNA LLSRARVYVL KSLDEAAMRK LVNRALTDPK
GLGERHLSLP DEAFQILLAA ADGDGRRLLN FLENAADLAE DGGEIGVELL QNLLGDSRRR
FDKGGEAFYD QISALHKSVR GSNPDGALYW YARMLDGGCD PLYIARRVVR MASEDIGNAD
PRALTLCLNA WDVQERLGSP EGELAVAQAI VYLACAPKSN AVYMAFKAAM RDAAEQGSQE
VPLHLRNAPT KLMKQLGYGE EYRYAHDEPD AYAAGEDYFP EALEPRQYYD PVPRGLELKI
RDKLQHLRNL DASSPRQRRK
|
|---|
| |