| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2294 |
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| Symbol | |
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| ID | 5108529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2529406 |
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| End bp | 2532708 |
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| Gene Length | 3303 bp |
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| Protein Length | 1100 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503536 |
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| Product | trehalose synthase |
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| Protein accession | YP_001187784 |
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| Protein GI | 146307319 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
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| TIGRFAM ID | [TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00139705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.000000883241 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCCAGAC GCAGCAGCGC CAGAACCTTT CTCAACGATC CGCAGTGGTA CAAGGACGCG
GTGATCTACC AGGTCCACGT GAAGTCCTTC TTCGATGCCA ACAACGACGG CATCGGCGAC
TTCCAGGGCC TGATCGACAA GCTCGACTAC ATCGCCGACC TCGGGGTGAA CACCCTCTGG
CTGCTGCCGT TCTATCCCTC GCCACGGCGT GACGACGGCT ACGACATCGC CATGTACCGG
GGCGTGCACC CGGACTACGG CAGCCTCACC GACGCCCGCC GCTTCATCGC CGAGGCGCAC
CGGCGCGGCC TGCGCGTGAT CACCGAGCTG GTGATCAACC ACACCTCCGA CCAGCACCCC
TGGTTCCAGC GCGCACGGCG CGCGAAGAAG GGCTCCAAGG CGCGCAACTA CTACGTCTGG
TCCGATCACG ACGACAAGTA CGCCGGCACC CGGATCATCT TCATCGACAG CGAGAAGTCC
AACTGGACCT GGGACGCGGT GGCCGGGCAG TACTTCTGGC ACCGCTTCTA CTCGCACCAG
CCGGACCTCA ACTTCGACAA CCCGCGGGTC ATCGAGGCGG TGCTCGGGGT GATGCGCTTC
TGGCTCGACA TGGGCGTCGA CGGCCTGCGC CTGGACGCCA TCCCGTACTT GATCGAGCGC
GACGGCACCA GCAGCGAGAA CCTGCCGGAA ACCCACGAAG TGCTCAAGCG CATCCGCGCC
GAAGTGGATG CGCGCTACCC CGATCGCATG CTGCTGGCCG AGGCCAACCA GTGGCCGGAG
GACACCCGAC CCTACTTCGG CGAAGACGAC GAATGCCACA TGGCCTTCCA CTTCCCGCTG
ATGCCGCGCA TGTACATGGC CATCGCCCAG GAAGACCGTT TTCCCATCAC CGACATCCTG
CGCCAGACCC CGGAGATTCC GCCCAATTGC CAGTGGGCCA TCTTCCTGCG CAACCACGAT
GAACTGACCC TGGAGATGGT CACCGACGAC GAGCGCGACT ACCTGTGGAA CTACTACGCC
GCCGACAGTC GCGCGCGCAT CAACCTGGGC ATCCGCCGGC GCCTGGCGCC CCTGGTGGGG
CGCGACCGGC GGCGCATCGA GCTGCTCAAC AGCCTGCTGC TGTCGATGCC CGGCACGCCG
ACGCTGTACT ACGGCGACGA GATCGGCATG GGCGACAACA TCTACCTGGG CGACCGCGAC
GGCGTGCGCA CACCCATGCA GTGGTCGGTG GACCGCAACG GCGGGTTCTC CCGCGCCGAC
CCGGCCAGCC TGGTGCTGCC GCCGATCATG GACCCGCTGT ACGGCTACCA GACCATCAAC
GTCGAGGCCC AGTCGCGCGA CCCGCACTCG CTGCTCAACT GGACGCGGCG CATGCTCGCC
ATCCGCAACC AGCACAAGGC CTTCGGCCGC GGCAGCCTGG AAATGCTGGC ACCGAGCAAC
CGACGCATCC TCGCCTACCT GCGCCTGCAC CGCACCGAGG AGGGCAGCGA GGAATGCATT
CTCTGCGTGG CCAACCTGTC CAGCGCGGCC CAGGCCGTCG AACTGGAACT GGCCGACTAC
CACGACCGGG TGCCGGTGGA GATGGTCGGC GGCGCGTCCT TTCCGCCCAT CGGCCAGTTG
CCCTACCTGC TGACCCTGCC GCCCTACGGT TTCTACTGGT TCTACCTGGC CGACGCCTCG
CAGATGCCCA GCTGGCACCT CAAGCCGGTG GAACGCATGC CCGAGCTGCA GACCCTGGTG
CTCAGCCGCG GCCTGAGCGA AGTGCTGGAA GGCCGGCCAC GGCAGATCCT CGAGCGCGAG
TCGCTGCCGC TGTACCTGCC GAAACGGCGC TGGTATGCCG GCGACCGGAT CGCCGCCGGT
GCGGTTCGAC TGCTCTATGT CGTGCCGCTG GACCAGGAGG CCGACGCGCC CCTGCTGGCC
GAACTGGAGG TGCGTGGCGA ACAGGGTGCC GAGTACTACC GCCTGCCACT GGCGGCGGTA
CCCGAGCGCG CCGAAGGCAA CGACCTGCCG CAGCAGATGG CCCTGGCCAG GCTGCGCCGG
GGTCGCCACG TGGAGCTGCT GACCGACGCC TTCAGCCTGC CGCAGTTCAG CCAGTCGATT
CTCGCCCTGC TGCGTCAGGA GCGTGTGCTG CACAGCGCCG CAGGGGAGAT CCAGTTCCGC
GCCGAGCCGG CCCTGCTGGC CCTGGATAGC GGCGAGGAGG CCACCTTCAA GCTGCTGTCG
GCCGAGCAAT CCAACAGTTC GGCGCTGGTC GGCAACCAGA TCCTGCTCAA GCTGCTGCGC
CGCGGTTTCG CCGGCATCCA CCCGGAGGTG GAAATGAGCC GCTTCCTCGG CGACCAGGGT
TTCGCCAATA TCGCGCCGCT GCTGGGCGAG GTGGTGCGGG TCGACGACCA GGACCAGCAC
ACCCTGGTCG TGGTGCAAGG CTACCTGGAC AACCAGGGCG ACGCCTGGCT GTGGACCCTC
AACACCCTGG AACGCGCCAT TCGCGAAGAG CTGACCGGTG GCATGAGCGA GCCGCAGGTC
GATGCGCTGG CCGAACTCGC GCAGTTCTGC AGCGTGCTCG GCAAGCGCGT CGGCGAGATG
CACGCGGTAC TGGCGCGGCC CACCGAGAAT CCGGCGTTCG GCTGTCGCCT GAGCGACGAG
CAGGACTGCG CCGCCTGGCG CGAGTCGATC GCCGAACAGC TGCATCAGGC CCTGCGCGCG
CTGCAGCAGC AGCGCGACGG CCTGGCGCCG GCCCTGGCCG AACAGACCGA CTGGCTGCTC
GCCCACGAAC AGCAGCTGCA GCAGGCGCTC GGCCATCTCA CCCAGCGTGT GGCCGGCGGT
CTGCGCATCC GCGTGCATGG CGACCTGCAC CTGGGCCAGG TGCTGGTGGT GCAGGGCGAT
GCCTACGTCA TCGACTTCGA GGGCGAGCCC AATCGCACCC TGCAGGAGCG CCGCCAGTAC
CACAGCCCGT TCAAGGACGT GGCCGGCATG CTGCGCTCGA TTGATTACGC AGCCGCCGTG
GCCCAGCGCA GCGCCGGAGG CATGGACGGC GGCGGCGACT CGCAGCAGAC GGTGGCGGCG
CTGGTGGCGC GCTACCGCGA AATTGCCCGC GATGCCTTTC TCGACGGCTA CCGCCTGGCG
GCAGCCGGCC TGCCTCACGA ATGGTACGAA CGCGACGGCG AAGAGGCCGC GCTGACCCTG
TTCAGCCTGG AAAAGGCCGC CTACGAAATC GTCTACGAGA GCGGGCACCG CCCCGACTGG
ATCGACGTTC CCCTGCAGGG CCTGGTGGAC CTGGCCCGAC AACTGATGGA GATAACGAGT
TGA
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| Protein sequence | MARRSSARTF LNDPQWYKDA VIYQVHVKSF FDANNDGIGD FQGLIDKLDY IADLGVNTLW
LLPFYPSPRR DDGYDIAMYR GVHPDYGSLT DARRFIAEAH RRGLRVITEL VINHTSDQHP
WFQRARRAKK GSKARNYYVW SDHDDKYAGT RIIFIDSEKS NWTWDAVAGQ YFWHRFYSHQ
PDLNFDNPRV IEAVLGVMRF WLDMGVDGLR LDAIPYLIER DGTSSENLPE THEVLKRIRA
EVDARYPDRM LLAEANQWPE DTRPYFGEDD ECHMAFHFPL MPRMYMAIAQ EDRFPITDIL
RQTPEIPPNC QWAIFLRNHD ELTLEMVTDD ERDYLWNYYA ADSRARINLG IRRRLAPLVG
RDRRRIELLN SLLLSMPGTP TLYYGDEIGM GDNIYLGDRD GVRTPMQWSV DRNGGFSRAD
PASLVLPPIM DPLYGYQTIN VEAQSRDPHS LLNWTRRMLA IRNQHKAFGR GSLEMLAPSN
RRILAYLRLH RTEEGSEECI LCVANLSSAA QAVELELADY HDRVPVEMVG GASFPPIGQL
PYLLTLPPYG FYWFYLADAS QMPSWHLKPV ERMPELQTLV LSRGLSEVLE GRPRQILERE
SLPLYLPKRR WYAGDRIAAG AVRLLYVVPL DQEADAPLLA ELEVRGEQGA EYYRLPLAAV
PERAEGNDLP QQMALARLRR GRHVELLTDA FSLPQFSQSI LALLRQERVL HSAAGEIQFR
AEPALLALDS GEEATFKLLS AEQSNSSALV GNQILLKLLR RGFAGIHPEV EMSRFLGDQG
FANIAPLLGE VVRVDDQDQH TLVVVQGYLD NQGDAWLWTL NTLERAIREE LTGGMSEPQV
DALAELAQFC SVLGKRVGEM HAVLARPTEN PAFGCRLSDE QDCAAWRESI AEQLHQALRA
LQQQRDGLAP ALAEQTDWLL AHEQQLQQAL GHLTQRVAGG LRIRVHGDLH LGQVLVVQGD
AYVIDFEGEP NRTLQERRQY HSPFKDVAGM LRSIDYAAAV AQRSAGGMDG GGDSQQTVAA
LVARYREIAR DAFLDGYRLA AAGLPHEWYE RDGEEAALTL FSLEKAAYEI VYESGHRPDW
IDVPLQGLVD LARQLMEITS
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