| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2288 |
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| Symbol | |
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| ID | 5108523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2521685 |
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| End bp | 2524156 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503530 |
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| Product | glycogen/starch/alpha-glucan phosphorylase |
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| Protein accession | YP_001187778 |
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| Protein GI | 146307313 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0058] Glucan phosphorylase |
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| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.359184 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.000599882 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGACT CCCAACTGGA TACCGACAGC CCCGTCGAAC ACTTCAAGGC GCTGATTTTG
TACAAACTGC GCTATGCCGT GGGCAAGGAC CCGGCCAACG CCTACGAGCA CGACTGGTTC
GAAGCCCTGG CGCTGGCCAC CCGCGATCAG CTGATCGATC ACTGGGAGGA GTCCTCCACG
CAGGTCGATC GTCAGGCCGC CAAGCGCGTC TATTACCTCT CGCTGGAATT TCTCATCGGT
CGCCTGCTGA TCGACAACCT GAGCAACCTC GGCCTGCTCG ACATCGCACG CCAGGCGATG
AGCGAACTGG GCGTGGAGCT CGAGCGCCTG CGCGAGATCG AACCCGACGC TGCGCTGGGC
AACGGCGGCC TCGGTCGCCT GGCCGCCTGC TTCATGGAAA GCATGGCGAC CCTGCGCCTG
GCGGCCCACG GTTACGGCAT CCGCTACGAG CACGGGCTGT TCCGTCAGGC GATCATCGAC
GGCTGGCAGG CCGAGCAGAC CGAGACCTGG CTGGACTTCG GCAACCCCTG GGAATTCGAG
CGCCCCGAGG TGGCCTACCG CGTCGGCTTC GGTGGCGGGG TGACCAATCA CGAGCTGGAC
GACGGCAGCA GTCGTCAGGT CTGGCAGCCG CTGGAAACGG TGCGCGCCAT CGCCTACGAC
ACGCCGGTGG TGGGCTGGCG TGGCGCCGCG GTGAACACCC TGCGGCTGTG GCGTGCCCGC
GCGGAGGAAA ACCTGCAGCT GGACCGCTTC AATGCCGGCG ACCACTTCGG CGCCGTGGCC
GGCGAGGTGC GTGCCGAGAG CATCTCCCAG GTGCTGTACC CGGCGGACGA CACCGAGGCC
GGCCAGGAGC TGCGTCTGCG CCAGGAATAC TTCTTGGTGT CCGCCTCGCT GCAGGACCTG
CTGGACCGCC ACATGCGCCT GCACGGCGAT CTGCAGAGCC TGCCCGACAA GGTGGCCATC
CAGCTCAACG ATACCCACCC GGCCATCGCC GTGGTGGAGA TGATGCGTCT GCTGGTGGAC
GAGCACCGCC TGCCCTGGGA GCAGGCGTGG GGCCTGACGG TGGCCTCGAC GGCCTACACC
AATCACACCC TGCTGCCGGA AGCCCTGGAA TCCTGGCCGG TGGCGCTGAT GGAGCGTCTG
CTGCCGCGCC ACCTGCAGAT CATCTACCTG CTCAACGCCG AACATATCGA CGCCCTGCGC
GCCAAGGACA TCCACGATTT CCAGCTGCTG CGCTCCGTGT CCCTGATCGA GGAGGATCAC
GGGCGCCGGG TGCGCATGGG CAATCTGGCG TTTCTCGGCG CGCACAGCAT CAACGGCGTC
TCGGCCCTGC ATACGCGGCT GATGCGCGAC ACGGTGTTTC GCGACCTGCA CCGGCTGTAC
CCGAACCGGG TCAACAACAA GACCAACGGC GTGACCTTCC GCCGCTGGCT GTTCCAGGTC
AACCCGGGGC TGACCCATCT GCTGGTGGAC ACCCTCGGCG AGGCCGTGCT GGAGGAGCCG
GAAACCGCCC TGGCGCAGCT GGAGCCCTAT GCCGAGCGCA AGGCCTTCCG CGAGGAATAC
GCGCTGTGCC GCCAGCGCAA CAAGGAAGCA CTGGCCGAGC GGGTGCGCCT GCTGCTCGGG
ATCAACCTGG ACACCTCGGC GATCTTCGAC GTGCATGTCA AGCGCATCCA CGAGTACAAG
CGTCAGCTGC TCAACCTGCT GCATACCGTG GCGCTGTACC AGGCCATCCG CAACGATCCC
ACCACCGAGT GGGTGCCGCG GGTGAAGATC TTCGCCGGCA AGGCCGCCGC CAGCTACTGG
CAGGCCAAGC TGATCATCAA GCTGGCCAAC GACATCAGCC GCACCATCAA CGGCGACCCG
ACCGTGCACG GCCTGCTCAA GCTGGTCTTC ATCCCCAACT ACAACGTCAG CCTGGCGGAA
ACCATCATCC CCGCTGCCGA CCTTTCCGAG CAGATTTCCA CCGCCGGCAT GGAGGCATCG
GGCACCAGCA ACATGAAATT CGCGCTCAAT GGCGCGCTGA CCATCGGCAC CCTGGATGGC
GCCAATGTGG AAATGGCCGA GCAGGTGGGC GAGCAGAACA TGTTCATCTT CGGCATGACC
GCCCAGCAGG TCGAGGCGCG TCGGCGCCTG GCACTGGACA TGAGCGACGT GGTGGCCGAT
TCCGAACGTC TGCAGGCCGC GCTGGGCGCG ATTCGCGATG GCGTGTTCTC GCCGGACGAT
CCGAGTCGTT ACGTGGATCT GGTCGATGGC CTGCTGTACC ACGACCGCTT CATGGTCTGC
GCCGACTTCG AGGCCTACTG GACCGCGCAG CGCCAGGTCG ACAAGCGCTG GCTGAAGCCC
AACGACTGGT GGCGCTCGGC CGTGTTCAAC ACGGCGCGCA TGGGCTGGTT CTCTTCGGAC
CGTACCATCA GCGAGTACGC GCGGGACATC TGGCAGGTAC CGCTGCCCCC GCGCACGCCT
CCGCAGCAGT GA
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| Protein sequence | MNDSQLDTDS PVEHFKALIL YKLRYAVGKD PANAYEHDWF EALALATRDQ LIDHWEESST
QVDRQAAKRV YYLSLEFLIG RLLIDNLSNL GLLDIARQAM SELGVELERL REIEPDAALG
NGGLGRLAAC FMESMATLRL AAHGYGIRYE HGLFRQAIID GWQAEQTETW LDFGNPWEFE
RPEVAYRVGF GGGVTNHELD DGSSRQVWQP LETVRAIAYD TPVVGWRGAA VNTLRLWRAR
AEENLQLDRF NAGDHFGAVA GEVRAESISQ VLYPADDTEA GQELRLRQEY FLVSASLQDL
LDRHMRLHGD LQSLPDKVAI QLNDTHPAIA VVEMMRLLVD EHRLPWEQAW GLTVASTAYT
NHTLLPEALE SWPVALMERL LPRHLQIIYL LNAEHIDALR AKDIHDFQLL RSVSLIEEDH
GRRVRMGNLA FLGAHSINGV SALHTRLMRD TVFRDLHRLY PNRVNNKTNG VTFRRWLFQV
NPGLTHLLVD TLGEAVLEEP ETALAQLEPY AERKAFREEY ALCRQRNKEA LAERVRLLLG
INLDTSAIFD VHVKRIHEYK RQLLNLLHTV ALYQAIRNDP TTEWVPRVKI FAGKAAASYW
QAKLIIKLAN DISRTINGDP TVHGLLKLVF IPNYNVSLAE TIIPAADLSE QISTAGMEAS
GTSNMKFALN GALTIGTLDG ANVEMAEQVG EQNMFIFGMT AQQVEARRRL ALDMSDVVAD
SERLQAALGA IRDGVFSPDD PSRYVDLVDG LLYHDRFMVC ADFEAYWTAQ RQVDKRWLKP
NDWWRSAVFN TARMGWFSSD RTISEYARDI WQVPLPPRTP PQQ
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