| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2194 |
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| Symbol | |
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| ID | 5109139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2424508 |
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| End bp | 2427120 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640503438 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001187686 |
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| Protein GI | 146307221 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.254587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00486766 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGATCAAC CCGTTAGCCG CCGCAGCCTG TCCGGCGCCT GGTTCGCCCA GTGCGGCTGG
AAGCCCTTCG CCTTTCAGAA GGAAGTCTGG CAGGCGGTCA AGACAGGCGA GTCCGGCCTG
CTGCACGCCT CCACCGGCGC TGGCAAGACC TACGCCCTGT GGTTCGCGGC CCTGGACCGT
TTCGCCCCCC CCTCTCCTGC CGTTACCACC AGACCTCGCC CGCGTAAAAA ACCGGTCATG
GCGCCGCTGA CGGTGCTGTG GATCACCCCG ATGCGCGCCC TCGCCGCCGA TACCGCGCGC
GCCCTGCAGG CGCCGCTGGA TGACCTGCAG ATTCCCTGGG ACATCGGCCT GCGCACCGGC
GATACCAGTA GCGCCGAACG CGCGCGGCAG AGCCGCAAGC TGCCGAGTAC GCTGATCACC
ACGCCGGAAA GCCTGACCCT GCTGCTGACC CGCGCCGATG CCCGCGAGGC CTTCGCCCAC
CTGCGCATGG TGGTGATCGA CGAGTGGCAC GAGCTGCTCG GCAACAAGCG CGGCGTGCAG
CTGCAACTGG CCCTCGCGCG CCTGCGCCTT TGGCATCCGT CGCTGCTGGT ATGGGCGCTG
TCCGCTACTC TCGGCAACCT CGAACATGCC CGCGAGGTGC TGATGCCCGC CGGGCGCCTG
GTGCAGGGCA AGCTGGCCAA GGATCTGCGC ATCGACAGCC TGCTGCCGGC CGGCCTGGAG
CGCTTTCCCT GGGCCGGGCA TCTGGGACTG CGCATGCTGC CGCAGGTGGT CGAGGAGCTG
GAGGCCAGCA GCACCGCACT GGTGTTCACC AACACCCGCT CGCAGGCGGA AAGCTGGTAC
CAGGCCCTGC TCGAGGCGCG CCCGGACTGG GCCGGCCTGC TCGCCCTGCA CCACGGCTCG
CTGTCGCAGG AGGTGCGCGA CTGGGTCGAA CTGGCGCTCA AGGAAGGCCG ACTGAAAGCC
GTGGTCTGCA CCTCGAGCCT AGACCTCGGG GTGGATTTCC TGCCGGTGGA ACGAGTGCTG
CAGATCGGCT CGCCCAAGGG CGTGGCCCGT CTCATGCAGC GCGCCGGCCG CTCCGGCCAT
GCCCCGGGGC GCCCGTCCCG CGCCACGCTG GTGCCTACCC ATAGCCTGGA AGTGCTGGAA
GCGGCCGCCG CGCAAAGCGC CGTGGCCGAG CGCAAGGTCG AGGCACGGCT ATCGCCGGAC
AAACCGCTCG ACGTGCTGGT CCAGCACCTG GTGAGCATGG CCCTGGGCGG TGGTTTCCAC
GCCGATGCCA TGCTGGCCGA GGTGCGCAGC GCCTGGGCCT ACCGCAGCCT CAGCGATGAC
GAGTGGCAGT GGGCATTGGC CTTCATCCGC CACGGCGGCC ATTCGCTGAC CGCCTACCCC
GATTACCGCC GCGCCGAGCC GGACACCAGC GGCCTGTGGC AGGTGCCCGA TGCGCGCCTG
GCGCGGCGGC ACCGCATGAG CATCGGCACC ATCGTCAGCG ACGCCAGCCT GGCGGTGAAA
TACTGGAGCA AGGGCGGCAG CGGAGGTTCT CTGGGCAGCG TCGAGGAAGG TTTCATCGCC
AGGCTGCGCC CCGGCGATAC CTTCCTCTTC GCCGGTCACC CGCTGGAACT GGTGCGGGTG
GAAAACATGA CCGTCTACGT GCGCCGCGCC ACCAGCCGCA AGGCCGCGAT CCCGCGCTGG
AACGGCGGAC GCATGCCGCT CTCCAGCGAA CTGGCGGACG CCGTGCTGGC CAAGCTCGAC
GCCGCTGCCC AGGAAGAATA CGTCGGTCCG GAGATGCAGT TGCTGCGCCC ATTGCTCGAC
GTGCAGCAGG CCTGGTCCGC CCTGCCTGGC GCCGCCACCC TGCTGGCGGA AGTGCTCAAG
TCCCGCGAAG GCTGGCATCT GTTCCTCTAC CCCTTCGCCG GTCGTTCGGT GCATCTGGGA
CTGGCCAGCC TGCTGGCCTG GCGCCTGGCC CGCGAACAGC CGCTGAGTGT TTCCATTGCG
GTCAACGACT ATGGCCTGGA GCTGCTGTGC CCCAGCGAGG TGGATTTCGC CGCACGACTC
ACGCCCGAGC TGTTCAGCAC GGACGACTTG CTCTCCGATG TGCTCGCCAG CCTCAACGCC
GGCGAACTGG CGCGCCGGCG CTTTCGCGAG ATCGCCCGCA TCGCCGGCCT GGTGTTCAGC
GGCTACCCCG GCGCGCCGAA GAGCACCCGC CAGCTACAGG CCTCCAGTGC ACTGTTCTTC
GACGTGTTCA GCCAATACGA CCCGGGCAAC CTGCTGCTCG GCCAGGCCCA GGAAGAAGTG
CTGCGCCAGG AGCTGGACGT GCAGCGCCTG CAACACACCC TGCAGCGTCT GCAATCGCGC
CGGCTGGATA TCCGTGCCGT CAAGCGCGCC ACGCCGTTCG CCTTCCCCCT GCTGGTGGAA
CGCTTTCGCG AAAGCCTGAG TTCAGAGAAA CTCGCTGACC GTATCCGGCG CATGGTCGCC
GATCTGGAAC AGGCCGCCGG CCCGGGTGGT TATCAGGACC CGGCATTCGC CATCGACGAC
GAGCGCCCGG CGCCGCGCAA AGGCCGCTCT CCGCGTCAGG GCAAGGACGG CCTGCCGCGG
CCACCGGCGC AGCGCCCGAA AAAACGCCGC TGA
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| Protein sequence | MDQPVSRRSL SGAWFAQCGW KPFAFQKEVW QAVKTGESGL LHASTGAGKT YALWFAALDR
FAPPSPAVTT RPRPRKKPVM APLTVLWITP MRALAADTAR ALQAPLDDLQ IPWDIGLRTG
DTSSAERARQ SRKLPSTLIT TPESLTLLLT RADAREAFAH LRMVVIDEWH ELLGNKRGVQ
LQLALARLRL WHPSLLVWAL SATLGNLEHA REVLMPAGRL VQGKLAKDLR IDSLLPAGLE
RFPWAGHLGL RMLPQVVEEL EASSTALVFT NTRSQAESWY QALLEARPDW AGLLALHHGS
LSQEVRDWVE LALKEGRLKA VVCTSSLDLG VDFLPVERVL QIGSPKGVAR LMQRAGRSGH
APGRPSRATL VPTHSLEVLE AAAAQSAVAE RKVEARLSPD KPLDVLVQHL VSMALGGGFH
ADAMLAEVRS AWAYRSLSDD EWQWALAFIR HGGHSLTAYP DYRRAEPDTS GLWQVPDARL
ARRHRMSIGT IVSDASLAVK YWSKGGSGGS LGSVEEGFIA RLRPGDTFLF AGHPLELVRV
ENMTVYVRRA TSRKAAIPRW NGGRMPLSSE LADAVLAKLD AAAQEEYVGP EMQLLRPLLD
VQQAWSALPG AATLLAEVLK SREGWHLFLY PFAGRSVHLG LASLLAWRLA REQPLSVSIA
VNDYGLELLC PSEVDFAARL TPELFSTDDL LSDVLASLNA GELARRRFRE IARIAGLVFS
GYPGAPKSTR QLQASSALFF DVFSQYDPGN LLLGQAQEEV LRQELDVQRL QHTLQRLQSR
RLDIRAVKRA TPFAFPLLVE RFRESLSSEK LADRIRRMVA DLEQAAGPGG YQDPAFAIDD
ERPAPRKGRS PRQGKDGLPR PPAQRPKKRR
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