| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2155 |
|---|
| Symbol | |
|---|
| ID | 5109495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2378876 |
|---|
| End bp | 2379916 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640503399 |
|---|
| Product | ribosomal RNA large subunit methyltransferase N |
|---|
| Protein accession | YP_001187647 |
|---|
| Protein GI | 146307182 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0820] Predicted Fe-S-cluster redox enzyme |
|---|
| TIGRFAM ID | [TIGR00048] radical SAM enzyme, Cfr family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00348508 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.317222 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCTCG CCGACCTTAC TCAACGCCTC GCCGCCCTTG GCGCCAAACC CCAGCACATC
GGGCGGATCA CGCGCGCCTG GTTGCAGGGC AAACCCCTGG ACACCGGCAC CAAGCACCAG
AAGACCGAGA ACTTCCTGCC GCTCTCCGTG CGCCAGGAGC TGCCGGCCAT TGCTGCGGAA
CTGGACGCGC TGGTCCGGCT GCGCTCCGAG CATCCGGGGG CCGATGGTTC GGCGCGCCTA
CTGGTGGAGC TGGCCGACAA GCAGATGGTG GAAAGCGTGC TGCTGCCGCG CGACGGCCTG
TGCATCTCCA GCCAGGTCGG TTGCGCCGTG GGCTGCGTGT TCTGCATGAC CGGCAAAAGC
GGCCTGCTGC GCCAGCTCAG CAGCGCCGAG ATGGTGGCCC AGGTCGCGCT GGGCCGGCGC
TTTCGCCCGG TGAAGAAGGT GGTGTTCATG GGCATGGGCG AGCCGGCGCA CAACCTCGAC
AACGTGCTCG AGGCCATCGA CCTGCTCGGT ACCGAGGGCG GCATCGGCCA CAAGAACCTG
GTGTTCTCCA CGGTGGGCGA TCCTCGGGTA TTCGAGCGCC TGCCGCAGCA GCGCGTGCGC
CCTGCCCTGG CCCTGTCGCT GCATACCACT GATGCCGAGC TGCGTCAGCG CCTGCTGCCC
AAGGCGCCTC GCATCGATCC CGAACAGCTG ATGGAACTGG GCGAGGCCTA CGCGCGCAGC
ATCGACTACC CCATCCAGTA CCAGTGGACG CTGCTCAAGG GCATCAACGA CAGCCAGCAA
GAGATGGACA ACATCCTGCG TCTGTTCAAG GGCAAGTTCG CCGTGCTCAA CCTGATCCCC
TACAACAGCC TGGACGCCGA CAACTACCAG CGTCCGGACG GCGAACGCAT CGTGCAGATG
GTGCGCTACC TGCACAGCCG AGGCGTGCTG ACCAAGGTGC GCAACAGCGC CGGTCAGGAT
ATCGACGGCG GCTGCGGGCA GCTAAGGGCG CGCGCCGTGG ACCTGGTGAA TACCAGCCGA
CTGCGTCTTT CTCGCCACTG A
|
|---|
| Protein sequence | MQLADLTQRL AALGAKPQHI GRITRAWLQG KPLDTGTKHQ KTENFLPLSV RQELPAIAAE
LDALVRLRSE HPGADGSARL LVELADKQMV ESVLLPRDGL CISSQVGCAV GCVFCMTGKS
GLLRQLSSAE MVAQVALGRR FRPVKKVVFM GMGEPAHNLD NVLEAIDLLG TEGGIGHKNL
VFSTVGDPRV FERLPQQRVR PALALSLHTT DAELRQRLLP KAPRIDPEQL MELGEAYARS
IDYPIQYQWT LLKGINDSQQ EMDNILRLFK GKFAVLNLIP YNSLDADNYQ RPDGERIVQM
VRYLHSRGVL TKVRNSAGQD IDGGCGQLRA RAVDLVNTSR LRLSRH
|
|---|
| |