| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2133 |
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| Symbol | |
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| ID | 5109473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2354785 |
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| End bp | 2355639 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503377 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001187625 |
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| Protein GI | 146307160 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00732746 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.30911 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTACC ACCCCAGCAT TGATACCGAA CTGCTGCGCA GCTTCGTGGC CATCGCCGAC
ACCGGCGGCT TCACCCGCGC CGCTGAAACG GTCAATCGCA CCCAATCGGC CGTCAGCATG
CAGATGAAAC GGCTTGAAGA AGACGTGGTA CAGCGCCCGC TGTTCGAGCG CGACGGCCGC
CAGGTGCGGC TGACGCCCGA AGGCCAGGTG CTGCTGGGTT ATGCGCGGCG CATTCTCAAG
CTGCATGGCG AAGTGCTCAA CACCCTGCGC GAACCCCATA TGGTTGGTGC CGTGCGCATC
GGCACGCCGG ACGACTATGT GATGCGTTTT CTGCCGGAAA TACTCTCGCG CTTCGCCCAG
GCCTACCCGC TGGTGCAGGT GGAGGTGCAT TGCGAACCCT CCGGCCAGCT GCTGCTGCGC
CAGGATCTCG ATCTGACCAT CGTTACCCGC CAGCCCGGCA AGGAGATCGG CCAACTGCTG
CGCCAGGAGC GCTTCGCCTG GGCCGTGGCC CAGGGCTTCT GCCCGCACGA GCAGAACCCC
ATGCCGCTGG CCATGTTCAA CGCCGACTGC TTCTGCCGCG AATGGGCCTG CAACGCGCTG
GATGCGATGA GTCGCCCCTA TCGCATCGCC TATACCAGCC CCAGCCTGTC GGCGATCTTC
GCCGTGGTAC GCGCCGGTCT GGCCGTCACC GCGCAGCTGC AAAGTCTGAT CACCCCGGAC
TTGCGCATTC TCGGCGAGGC CGAAGGCCTG CCCCTGCTGC CACTGACCAG CATCGTGCTG
CTGCGCAACG AGAGCAGCCA GTCCCCGGTG ACCGAGTGCC TGGCCGAACA TATCGTCGAA
GGCTTCAGGC TATAG
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| Protein sequence | MAYHPSIDTE LLRSFVAIAD TGGFTRAAET VNRTQSAVSM QMKRLEEDVV QRPLFERDGR
QVRLTPEGQV LLGYARRILK LHGEVLNTLR EPHMVGAVRI GTPDDYVMRF LPEILSRFAQ
AYPLVQVEVH CEPSGQLLLR QDLDLTIVTR QPGKEIGQLL RQERFAWAVA QGFCPHEQNP
MPLAMFNADC FCREWACNAL DAMSRPYRIA YTSPSLSAIF AVVRAGLAVT AQLQSLITPD
LRILGEAEGL PLLPLTSIVL LRNESSQSPV TECLAEHIVE GFRL
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