| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2068 |
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| Symbol | |
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| ID | 5109802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2289642 |
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| End bp | 2291885 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503312 |
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| Product | lysine decarboxylase |
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| Protein accession | YP_001187561 |
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| Protein GI | 146307096 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.014755 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.104573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAAAG ATCTAAAATT CCCCGTCCTC ATCGTTCACC GCGACATCAA GGCCGACACG
GTGGCCGGCG ATCGCGTGCG CGCCATCGCG CGCGAGCTGG AACAGGACGG TTTCAGCATT
CTCCCCACCG CCAGTGCAGC CGAGGGCCGC ATCGTCGCCT CCACCCACCA CGGTCTGGCC
TGCATCCTGG TGGCCGCCGA GGGCGCGGGC GAGAACAGTC GTCTGCTGCA GGACATGGTC
GAGCTGATCC GCGTGGCGCG GGTGCGTGCT CCGCAATTGC CGATCTTCGC CCTCGGCGAG
CAGGTCACCA TCGAGAATGC GCCGGCCGAG GCCATGGCCG ATCTCAATCA CCTGCGCGGC
ATCCTCTACC TCTACGAAGA CACCGTTTCC TTCCTGGCCC GTCAGGTGGC GCGGGCGGCG
CACAACTACC TCGACGGCCT GCTGCCGCCG TTCTTCAAGG CGCTGGTGCA GCACACCGCA
CAATCCAACT ATTCTTGGCA CACGCCCGGT CACGGCGGCG GCGTGGCTTA CCGCAAGAGT
CCGGTAGGCC AGGCGTTTCA CCAGTTCTTC GGGGAAAACA CCCTGCGTTC GGATCTGTCG
GTGTCGGTGC CGGAGCTGGG GTCGCTGCTC GATCACACAG GTCCGCTCGC CGAAGCCGAG
GCGCGCGCCG CGCGCAACTT CGGCGCCGAC CACACCTTCT TCGTGATCAA CGGCACGTCC
ACGGCGAACA AGATCGTCTG GCATTCGATG GTCGGGCGTG ACGATCTGGT ACTGGTGGAC
CGCAACTGCC ACAAGTCGAT CCTGCATTCG ATCATCATGA CCGGCGCGAT CCCGCTGTAC
CTGTGCCCCG AGCGCAACGA GCTGGGCATC ATCGGGCCGA TTCCGCTGTC GGAGTTCAGC
CGTGAATCGA TCCAGGCCAA GATCGACGCC AGCCCGCTGG CACGTGGTCG CGCGCCCAAG
GTCAAGCTGG CGGTGGTGAC CAACTCCACC TACGACGGGC TTTGCTACAA CGCCGAGATG
GTCAAGCAGG CGCTGGGCGA TTCGGTCGAG GTGCTGCACT TCGACGAGGC CTGGTACGCC
TACGCCGCGT TCCATGAGTT CTATGCCGGC CGCTACGGCA TGGGCACCCA GTGCGACGAG
CGCTCGCCGC TGGTGTTCAC CACCCATTCC ACGCACAAGC TGCTGGCCGC GTTCAGCCAG
GCCTCGATGA TCCATGTGCA GGATGGCGGG CAGCGCCAAT TGGACCGTGA CCGCTTCAAC
GAAGCCTTCA TGATGCACAT CTCCACGTCG CCGCAGTACG GCATCATCGC CTCGCTGGAT
GTGGCCTCGG CGATGATGGA AGGCCCGGCC GGGCGTTCGC TGATCCAGGA AACCTTCGAC
GAGGCCCTGA GCTTCCGTCG TGCCCTGGCC AACGTGCGCC GCAACCTCGA TGCCGAGGAC
TGGTGGTTCA GCATCTGGCA GCCGGGCGAG GCCGACGGCG CCGACAGCCT GTCGACTGCC
GACTGGGTGC TGCAGCCGGA CGCCGACTGG CACGGTTTCG GCGAGGTAGC CAATGACTAT
GTGCTGCTTG ACCCGATCAA GGTGACGCTG GTGATGCCCG GTCTCAACGC GGCCGGCAAG
CTGCAGGAGC GTGGGATCCC GGCGGCGGTG GTCAGCAAGT TCCTCTGGGA GCGCGGCCTG
GTCGTGGAAA AGACCGGTCT GTATTCCTTC CTGGTGCTGT TTTCCATGGG CATCACCAAG
GGCAAGTGGA GCACGCTGCT GACCGAACTG CTGGAATTCA AGCGCAGCTA CGACGCCAAT
CTGCCGCTGG TGGACGTGCT GCCCTCCATC GCTCATGCGG GTGGCGGCTG CTATCAGGGC
ATGGGGCTGC GCGATCTGTG TGATGCGCTG CATGGCTGCT ACCGCGACAA CGCCACGGCC
AAGGCGTTGA AGAGCATGTA CACGGCTTTG CCGGAAGTGG CGATCAAGCC GGCCGAGGCT
TACGACCGCC TGGTGCGCGG CGAGGTCGAG GCGGTGCCGA TCGATCAGCT GCAGGGGCGC
ATCGCTGCCG TGATGCTGGT GCCTTATCCG CCGGGCATTC CGCTGATCAT GCCGGGTGAG
CGCTTCACCG CCGCGACCCG CTCGATACTC GATTACCTGG CCTTCGCGCG GACCTTCGAT
CAGGCCTTCC CGGGCTTCGA CATCGACGTG CACGGCCTGC AGACCGAGGC GGGGCAGTAT
TGCGTCGATT GTCTCGTGGA GTGA
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| Protein sequence | MYKDLKFPVL IVHRDIKADT VAGDRVRAIA RELEQDGFSI LPTASAAEGR IVASTHHGLA
CILVAAEGAG ENSRLLQDMV ELIRVARVRA PQLPIFALGE QVTIENAPAE AMADLNHLRG
ILYLYEDTVS FLARQVARAA HNYLDGLLPP FFKALVQHTA QSNYSWHTPG HGGGVAYRKS
PVGQAFHQFF GENTLRSDLS VSVPELGSLL DHTGPLAEAE ARAARNFGAD HTFFVINGTS
TANKIVWHSM VGRDDLVLVD RNCHKSILHS IIMTGAIPLY LCPERNELGI IGPIPLSEFS
RESIQAKIDA SPLARGRAPK VKLAVVTNST YDGLCYNAEM VKQALGDSVE VLHFDEAWYA
YAAFHEFYAG RYGMGTQCDE RSPLVFTTHS THKLLAAFSQ ASMIHVQDGG QRQLDRDRFN
EAFMMHISTS PQYGIIASLD VASAMMEGPA GRSLIQETFD EALSFRRALA NVRRNLDAED
WWFSIWQPGE ADGADSLSTA DWVLQPDADW HGFGEVANDY VLLDPIKVTL VMPGLNAAGK
LQERGIPAAV VSKFLWERGL VVEKTGLYSF LVLFSMGITK GKWSTLLTEL LEFKRSYDAN
LPLVDVLPSI AHAGGGCYQG MGLRDLCDAL HGCYRDNATA KALKSMYTAL PEVAIKPAEA
YDRLVRGEVE AVPIDQLQGR IAAVMLVPYP PGIPLIMPGE RFTAATRSIL DYLAFARTFD
QAFPGFDIDV HGLQTEAGQY CVDCLVE
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