| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2041 |
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| Symbol | |
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| ID | 5109775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2255115 |
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| End bp | 2256950 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503282 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001187534 |
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| Protein GI | 146307069 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.115359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.637814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAAG CTGCCCGTGC CCCGGCACAC GACACCATCA TCCAGGAGTC CTGGTCTCGT
TGTCGTGACT ACGGCCTGAC CCACCAGAGC ACGCCGCGCT TCGACCCGCC AGCCCCCGGC
GAACTCTCGG CCCTGCTGGA AAGCCGCCAG GCGCTGGTGC AGACCACCCA TCAGGAAGTG
CTGCCCTACT ACGGCACCAT CCTCGCCAAC TCCAACTGCC TGATCATGCT CGCCGACGAG
CAGGGTCGGC TGCTGCAATC CTGGGGCGAC CAGCGTTTCA TCGAGCCGCG CCAGGCTGCC
GGCTTCGTCG CCGGGGCCAG CTGGCTGGAG CGCTACACCG GCACCAACGC CATCGGCACC
GCGCTCAGTT GCGGCCAGGC CGTGCATATC CAGCACGACG AGCACTTCCT CAAGGCCAAC
CGTTTCATGA CCGGCTCGGC CTCGCCGATC TTCGACGAGC AAAGGCGCAT GATCGCCGTG
CTCGACGTGT CCAGCGACAG CTACCTGCCG CCGGCGCACA CCCTCGGCAT GGTCAAGATG
ATGAGCCAGT CGGTGGAGAA TCGCCTGATC CTCAAGCTGT TCGCCGACCA GTATCACCTG
CTCAGCTTCA ACACCAGCCT GGACAACCTC GACAGCCCCT GGGCCGGCCT GGTGGTGTTC
GACGAACGCG GCCATGTGGT CTCGGCCAAC CGCCGCGCCG ACAACCTGCT TGGCCAGTCG
CTGACCTACG GCACCATCGA GCAGTTGTTC GACGTGCCAC TGCAGCAACT GCTTAACCAG
CCGGACGGCC AGCCATTCAG CCTGCGCACC AGCGGCCATT TTCGCTTTCA CGCGCGGGTG
CGCCGCCCTG CCCGGCCGGC GCCGATACAG GCCCGCGATT TCCGTCCGCA GGCCCCCACG
CCCGTACCCG AGGAGCCGCC GCTGCGTGCG CTGAGCCTGG GTGACGCGCG GATGGACAAG
GCCATCCGCC TGGCCGAGCG GTTGCTGGAG AAGGACATCC CGATCCTGGT GCAGGGTGAA
ACCGGCGCCG GCAAGGAGGT CTTCGTCAAG GCCCTGCACC ACGCCAGCTC ACGCGCTAGC
CAGCCCTTCA TCGCGGTCAA CTGCGCAGCT ATTCCGGCGG AGCTGGTGGA GTCGGAGCTG
TTCGGCTACG AAAAAGGCGC CTTTACCGGC GCCAGCCAGA AGGGCCATAT CGGGCTGATC
CGCAAGGCGC ACAAGGGCAC GCTGTTTCTC GACGAGATCG GCGACATGCC GCTGCGGGTG
CAGGCGCGTC TGCTGCGCGT GCTACAGGAG CGCTGCGTAC AGCCACTGGG CAGCAGCGAG
CTGCATCCGG TGGACGTACG CCTGGTCTCC GCCACCAACC GTCCGCTGCG CCAGGACGTC
GACAGCGGCC AGTTCCGCGC CGACCTCTAC TACCGCATCA GCGGCCTGAA CCTGGAGCTG
CCACCGCTGC GCGAGCGCAG CGACAAGCAG GCGCTGTTCC AGCGGCTATG GGAGCAACAT
CGCGAACCCA GGCAGTGGGC GGGGCTCAGC CGCGAGGTCG TGGAGCTGTT CGAGCGCCAC
CCCTGGCCGG GCAATCTGCG CCAGCTCAGC AGCGTGCTGC GCGTGGCCCT GGTGATGGCC
GATGAGCAAC CTATCCGTGC CGAACACCTG CCGGACGATT TCTTTCTCGA CCTGCCAACG
GACGCCCCTG CGCAAGCCCC GGCCGAGATC GACGCCGGCG ACCTAGCCAG CCAGTACCAG
GCCTGCGGGG GCAACATTTC CTACCTGGCC CGCCACCTCG GCCTGAGCCG TAATACGCTG
TACAAGCGCC TGCGCGAACA GGGCGTCAGG CCCTGA
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| Protein sequence | MTEAARAPAH DTIIQESWSR CRDYGLTHQS TPRFDPPAPG ELSALLESRQ ALVQTTHQEV
LPYYGTILAN SNCLIMLADE QGRLLQSWGD QRFIEPRQAA GFVAGASWLE RYTGTNAIGT
ALSCGQAVHI QHDEHFLKAN RFMTGSASPI FDEQRRMIAV LDVSSDSYLP PAHTLGMVKM
MSQSVENRLI LKLFADQYHL LSFNTSLDNL DSPWAGLVVF DERGHVVSAN RRADNLLGQS
LTYGTIEQLF DVPLQQLLNQ PDGQPFSLRT SGHFRFHARV RRPARPAPIQ ARDFRPQAPT
PVPEEPPLRA LSLGDARMDK AIRLAERLLE KDIPILVQGE TGAGKEVFVK ALHHASSRAS
QPFIAVNCAA IPAELVESEL FGYEKGAFTG ASQKGHIGLI RKAHKGTLFL DEIGDMPLRV
QARLLRVLQE RCVQPLGSSE LHPVDVRLVS ATNRPLRQDV DSGQFRADLY YRISGLNLEL
PPLRERSDKQ ALFQRLWEQH REPRQWAGLS REVVELFERH PWPGNLRQLS SVLRVALVMA
DEQPIRAEHL PDDFFLDLPT DAPAQAPAEI DAGDLASQYQ ACGGNISYLA RHLGLSRNTL
YKRLREQGVR P
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