Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2003 |
Symbol | |
ID | 5109894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2213859 |
End bp | 2215445 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640503244 |
Product | ABC transporter related |
Protein accession | YP_001187496 |
Protein GI | 146307031 |
COG category | [R] General function prediction only |
COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.118433 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.00762466 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | TTGATTTCCA CCGCTAACAT CACCATGCAG TTCGGCGCCA AGCCGCTGTT CGAGAACGTT TCCGTCAAGT TCAACAACGG CAACCGCTAC GGTCTGATCG GCGCCAACGG CTGCGGCAAG TCGACCTTCA TGAAGATTCT CGGCGGCGAT CTGGAGCCAT CGGGCGGCCA GGTGATGCTC GAACCCAACG TGCGCCTGGG CAAGCTGCGC CAGGATCAGT TCGCCTACGA ACAATTCAAC GTGATCGACA CCGTGATCAT GGGCCACGAG GAGCTGTGGA AGGTCAAGGC CGAGCGCGAC CGCATCTATT CGCTGCCGGA GATGAGCGAA GAGGACGGCA TGAAGGTGGG CGAACTCGAA GGCGAGTTCG CCGAGATGGA CGGCTACACC GCCGAATCCC GTGCCGGCGA GCTGCTCCTG GGCCTGGGCA TTCCGCTGGA ACAGCACTTC GGCCCGATGA GCGAAGTCGC CCCCGGCTGG AAGCTGCGCG TGCTGCTGGC TCAGGCGCTG TTCGCCGACC CGGACGTGCT GCTGCTCGAC GAGCCGACCA ACCACCTGGA CATCAACACC ATCCGCTGGC TGGAAAACAT CCTCACGGCG CGTAACAGCA CCATGATCAT CATTTCCCAC GACCGACACT TCCTCAATGC GGTCTGCACG CATATGGCGG ACCTGGACTA CGGCGAGCTG CGTCTGTTCC CCGGCAACTA CGACGAGTAC ATGACGGCCT CGACCCAGGC GCGCGAGCAG CTGCTGGCCG ACAACGCCAA GAAGAAGGCG CAGATCGCCG AGCTGCAGAC CTTCGTCAGC CGCTTCTCGG CCAACGCCTC CAAGGCCAAG CAGGCCACCA GCCGCGCCAA GCAGATCGAC AAGATCCAAC TGGCCGAGGT CAAGCCGTCC AGCCGCGTCA GCCCGTTCAT CCGCTTCGAC CAGACCAAGA AGCTGCATCG CCAGGCGGTG ACCGTCGAGA AGCTGTCCAA GGCCTTCGAC GACAAGGTGC TGTTCAAGAA CTTCAGCTTC ACCATCGAGG CCGGCGAGCG CGTGGCCATC ATCGGCCCCA ACGGCATCGG CAAGACCACC CTGCTGCGTA CCCTGGTCGG CGAAATGCAG CCGGACGCCG GCAGCGTGAA GTGGACCGAC AGCGCCGAGG TGGGCTACTA CGCCCAGGAT CACGCGCACG ACTTCGAAGC CGATGAAACC CTGTTCGAGT GGATGGGCCA GTGGACCACC GGCGAGCAGA ACATCCGCGC CGCGCTGGGC CGCATGCTGT TCTCCTCCGA CGAGATCCAG AAGTCGGTGA AGGTGCTCTC CGGTGGCGAA CAGGGCCGCA TGCTGTTCGG CAAGCTGGCC TGCCAGAAGC CCAATGTGCT GGTGATGGAC GAACCGACCA ACCACCTGGA CATGGAATCG ATCGAGGCGC TCAACCTGGC GCTGGAGAAC TACCCGGGCA CGCTGATCTT CGTCAGCCAC GACCGCGAGT TCGTCAGCTC CCTGGCCACG CGCATCATCG AGCTGTCGGA CAACGGCGTG ACCGACTTCT CCGGCACCTA CGACGATTAC CTGCGCAGCC AGGGCATCAT CGTCTGA
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Protein sequence | MISTANITMQ FGAKPLFENV SVKFNNGNRY GLIGANGCGK STFMKILGGD LEPSGGQVML EPNVRLGKLR QDQFAYEQFN VIDTVIMGHE ELWKVKAERD RIYSLPEMSE EDGMKVGELE GEFAEMDGYT AESRAGELLL GLGIPLEQHF GPMSEVAPGW KLRVLLAQAL FADPDVLLLD EPTNHLDINT IRWLENILTA RNSTMIIISH DRHFLNAVCT HMADLDYGEL RLFPGNYDEY MTASTQAREQ LLADNAKKKA QIAELQTFVS RFSANASKAK QATSRAKQID KIQLAEVKPS SRVSPFIRFD QTKKLHRQAV TVEKLSKAFD DKVLFKNFSF TIEAGERVAI IGPNGIGKTT LLRTLVGEMQ PDAGSVKWTD SAEVGYYAQD HAHDFEADET LFEWMGQWTT GEQNIRAALG RMLFSSDEIQ KSVKVLSGGE QGRMLFGKLA CQKPNVLVMD EPTNHLDMES IEALNLALEN YPGTLIFVSH DREFVSSLAT RIIELSDNGV TDFSGTYDDY LRSQGIIV
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