| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1986 |
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| Symbol | |
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| ID | 5109877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2187034 |
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| End bp | 2190663 |
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| Gene Length | 3630 bp |
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| Protein Length | 1209 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503222 |
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| Product | DNA helicase/exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001187479 |
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| Protein GI | 146307014 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0259297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.207959 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAAC AGCGTCCTCT GGCCCTGACG TTTCCCCTGC ATGGCAGTCG CCTGATCGAA
GCCAGCGCCG GTACGGGCAA GACCTTCACC ATTTCCGCGC TCTACCTGCG GCTGATCCTC
GGCCATGGCG GCGACGCCGC GTTCCGCGAG CCCCTGCTGC CGCCGCAGAT TCTGGTGGTG
ACCTTCACCG ACGCGGCCAC CCGCGAATTG CGCGACCGGA TTCGCGCGCG CCTGGTCGAG
GCCGCGACCG TATTTCGTGG TGATGCCCAA GGCGATGATC TGCTGCGCGA ATTGCGCAGT
GACTTCGCCC AGACGCAGTG GGACGAGTGC GCCCGCCGTC TGGAGCTGGC GGCGCAGTGG
ATGGACGAGG CAGCCGTGTC CACCATTCAC GGCTGGTGCC AGCGCATGTT GCGCGAGCAT
GCCTTCGACA GCGGCAGTCT GTTCAGCCAG ACCCTGGAGA CCGATCACAG CGAGCTGCTG
GCCGAAGTGG TGCGCGACTA CTGGCGGCAG CACTGCTATC CGTTGCAGGG CGCGGCGCTG
CAATGGGTTG CAGGTGTCTG GGGGACGCCT GCAGGGCTAG GTAGCAGGCT GCGACCGCTG
TTGGGCGAAG AGGGGGAGGT TGCGACGCAA GCGCTGGGCG AACTGCTCGA TGGCGCGCTG
CAGCAGCGCG AGCAGGCGCT TGCCGAGCTC AAGGCGCCCT GGCTGACGTG GGCCGATGAA
CTGCAGCTGC TGCTGGATGC TGCGGTGGCG GCCAAGCAGG TGGACGGCAA GAAACTCCAG
GCGCGCTTCT ACAATCCCTG GCTGGCCAAG TTGCGCGAGT GGGCCGGTGG CGAAGAACCG
CGCCTTGACC TGGGCACCGG CTTCATCCGC CTGACCCCCG AAGGCCTGGC CGAAGCCTGG
AAAGGCGAAG CGCCTGCTCA TCCGGCATTG AAGGCCATGG CTTTGCTCAA GGCGCAACTC
GATGCGCTGC CTGATCCCGC TGACGCGGCG TTGCGCCACG CGGCTGCCTG GGTGCGCCAG
CGCTTCGATT GGGAGAAACG CCAGCGCGCG GAGATGGGCT TCGACGACAT GCTCGTACGC
CTGGACGCTG CCCTGCAAGG CAGCAACGGC GCGCGCCTGG CTGAAGTGAT TCGTCGTCAG
TTCCCGGTGG CGCTGATCGA CGAATTCCAG GACACCGACC CGCTGCAGTA CCGCATCTTC
GATACGCTCT ACGAGGTCGA GGCCAACCGC GGCGACTGCG GCCTGTTCAT GATCGGCGAC
CCCAAGCAGG CCATCTATTC CTTCCGTGGC GCCGACATTC ATACCTACCT GCGCGCGCGC
CGGGCGACGT TGGGTCGGCA CTACAACCTG GAGAAGAACT TCCGTTCCAG CCAGGCCATG
GTCGATGCCG TCAACGGCGT GTTCCTGCGG GCCGAGCAGC GTGACGGCGG CGAGGGGGCG
TTCCTGCTGC GCGATGATCT GCCTTTTATC GAGGTGGGCG CGCAGGGGCG AGGCGAGGTG
TGGAGCGTCG AGGGGCAGGC GCAACCCGCC CTGACGGTGT GGCATCTGGC GAGCGACGAG
CCGGTTGCCA AGGGCGTTTA TCTGGATGCC ATGGCGGCCG GTGCGGCCAG CGAGATCGTG
CGTCTGCTGG ATCTGGGGCA GTGTGGGCAG GCGGGCTTCA TCAAGGATGG CGTGCTGAGT
GCTCTGCGTC CTAGCGACAT TGCGGTGCTG GTGCGTGATT TCAACGAGGC GCAGGCCATT
CGCGGCGAGC TGGCTGCACG CGGCGTGCGC AGCGTCTATC TCTCCGACAA GGATTCGGTG
TTCGCCGCCC AGGAAGCACG CGATCTGCTG CTGTGGCTGC GCGCCTGTGC CGAGCCGGAT
CAGGATCGCC CGCTGCGTGC GGCGCTGGCC AGCGCGACGC TGGGGTTGGC GCTGAGCGAG
CTGGAGCAGC TCAACCTCGA CGAGCGAACC TGGGAGCGCC GGGTCATGCA GTTCCGCGAC
TACCGTCAGC GCTGGCAGCG TCAGGGCGTG CTGCCGATGC TGCGTCAGTT GCTGCAGGAC
TTCGAGCTGC CGCAGCGCCT GATGGGGCGT GACGATGGCG AGCGGGTACT GACCAATCTG
CTGCACCTGG CCGAGCTGCT GCAGCAGGCT GCCGCCGAGC TCGATGGCGA ACTGGCGCTG
ATTCGCCACC TAGGCGAGCT GTTGACCGGT GAGGGGCAGG CTGCCGATGA GCAGGTGCTA
CGCCTGGAGA GCGACGAGGC GCTGGTACGC GTGGTCACCA TTCACAAATC CAAGGGGCTG
GAGTACCCCC TGGTGTTCCT ACCATTCGTT TGCGCCTTCC GTCCGGTGGA TGACAAGAAG
CCGCTGCAGA TTCACGACGG CGAACGCCGC CGCCTGGTGC TCAAGGCCGA TGACGACAGT
CTGGCGCGCG CCGAGCGCGA ACGCCTGGGT GAAGACCTGC GCCTGCTCTA CGTGGCGTTG
ACCCGTGCCC GGCATGCCTG CTGGCTGGGC GTGGCGGATC TGAAGATCGG CAACGGCAAG
AAGTCGCGTC TGCACGAATC GGCGTTGGGC TACTTGCTCG GGGGCGGATT GCCTCTGGCG
GCCAGCGGCG AGCTTGTCAA CTGGCTCGCG CCGTTCGCCA GCGGACTCGA TAGCGCCGTG
TCGCCTGTGC CGCCGGCCAG TGAGCAGCGT TATCGCATGA TCGAAGAAGG GCAGTTCGTG
CCGCACTGGC GCACGCCGGC GCGGCGCGCT GCCGAGCACT GGTGGATCGC CTCCTACAGT
GCACTGCGTC TGGACGAGGA CGCGCCCAGT CAGGTCAGCC GCCACGAGGA CGCCGCGCCC
GATAGTCCGG CGATGCAGAA CGTCATCGAC GATGAGGATC CGTTGCTGGC CCTGGCGCCG
CTGCCGGCAT CCGCTCAAGG GCTGCATCGC TTCCCGCGTG GGCCCAACCC CGGCACCTTC
CTCCATGGCC TGCTGGAAAT GGCAGCGCAG GAAGGCTTCG CCACCTTGGC GCAGGATCCG
CACAGGTTGC GCGAGGCGTT GGCCAGGCGT TGCCAGCGGC GCGGTCTGCA AAGCTGGATC
GATCCGCTGC AGGACTGGCT GCTGGCGCTG CTGAGCCAGC CGCTCCCGTT GGCGGGCGCG
GATACCGTCG TGTTGGCGCA ACTAACGCAG TATCAGCCCG AGCTGGAGTT CTGGTTCGAG
GCGCGTGAGG TGGATGTCAG GCTGCTGGAT CAGTGGGTGC AACAGTGCGA GTTACCGGGT
GTCGCCAGGC AGCCGCTGCG CGCCGATACC CTCAACGGTA TGTTCAAGGG CTTTATCGAT
CTGGTATTCG AACATCAGGG GCGTTATTAC GTGGCGGATT ACAAATCCAA CTGGCTCGGC
AGCGACGATG GCGCCTACAC CCGTGAAGCC ATAGAGGTCG CCATCGTCAG CCACCGCTAC
GATCTGCAGT ACGTGCTCTA CGTATTGGCC CTGCATCGGC AGTTGCGCCT GCGCCTGCCG
GATTACGACT ATGACCGGCA TGTGGGTGGC GCGCTCTATG TGTTTCTGCG CGCACCGCAG
CAGGGCGCCT ACCTGGCCCG GCCGCCTCGT GAGCTGATCG AGCGGCTGGA CGCGCTGTTC
ATGGGCGAAG CAGTGGAGGG CGCGGCATGA
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| Protein sequence | MNQQRPLALT FPLHGSRLIE ASAGTGKTFT ISALYLRLIL GHGGDAAFRE PLLPPQILVV
TFTDAATREL RDRIRARLVE AATVFRGDAQ GDDLLRELRS DFAQTQWDEC ARRLELAAQW
MDEAAVSTIH GWCQRMLREH AFDSGSLFSQ TLETDHSELL AEVVRDYWRQ HCYPLQGAAL
QWVAGVWGTP AGLGSRLRPL LGEEGEVATQ ALGELLDGAL QQREQALAEL KAPWLTWADE
LQLLLDAAVA AKQVDGKKLQ ARFYNPWLAK LREWAGGEEP RLDLGTGFIR LTPEGLAEAW
KGEAPAHPAL KAMALLKAQL DALPDPADAA LRHAAAWVRQ RFDWEKRQRA EMGFDDMLVR
LDAALQGSNG ARLAEVIRRQ FPVALIDEFQ DTDPLQYRIF DTLYEVEANR GDCGLFMIGD
PKQAIYSFRG ADIHTYLRAR RATLGRHYNL EKNFRSSQAM VDAVNGVFLR AEQRDGGEGA
FLLRDDLPFI EVGAQGRGEV WSVEGQAQPA LTVWHLASDE PVAKGVYLDA MAAGAASEIV
RLLDLGQCGQ AGFIKDGVLS ALRPSDIAVL VRDFNEAQAI RGELAARGVR SVYLSDKDSV
FAAQEARDLL LWLRACAEPD QDRPLRAALA SATLGLALSE LEQLNLDERT WERRVMQFRD
YRQRWQRQGV LPMLRQLLQD FELPQRLMGR DDGERVLTNL LHLAELLQQA AAELDGELAL
IRHLGELLTG EGQAADEQVL RLESDEALVR VVTIHKSKGL EYPLVFLPFV CAFRPVDDKK
PLQIHDGERR RLVLKADDDS LARAERERLG EDLRLLYVAL TRARHACWLG VADLKIGNGK
KSRLHESALG YLLGGGLPLA ASGELVNWLA PFASGLDSAV SPVPPASEQR YRMIEEGQFV
PHWRTPARRA AEHWWIASYS ALRLDEDAPS QVSRHEDAAP DSPAMQNVID DEDPLLALAP
LPASAQGLHR FPRGPNPGTF LHGLLEMAAQ EGFATLAQDP HRLREALARR CQRRGLQSWI
DPLQDWLLAL LSQPLPLAGA DTVVLAQLTQ YQPELEFWFE AREVDVRLLD QWVQQCELPG
VARQPLRADT LNGMFKGFID LVFEHQGRYY VADYKSNWLG SDDGAYTREA IEVAIVSHRY
DLQYVLYVLA LHRQLRLRLP DYDYDRHVGG ALYVFLRAPQ QGAYLARPPR ELIERLDALF
MGEAVEGAA
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