Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1963 |
Symbol | |
ID | 5109854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2159874 |
End bp | 2161649 |
Gene Length | 1776 bp |
Protein Length | 591 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640503197 |
Product | Pyrrolo-quinoline quinone |
Protein accession | YP_001187456 |
Protein GI | 146306991 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4993] Glucose dehydrogenase |
TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0160229 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.256272 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACG CCGGTCTTCG CCAGCCTTTC CTCCTCACCG CACTCTGTGC CGCCATGCTG TTGCCGTCCG CCGCCGCGCT GGCGGTCACC GACGCCGAGA TTCTCAAGGA CGCCACCACC ACCAACGAGA TCGTCACCAA CGGCCTCGGT CTGCAGGGCC AGCGCTACAG CCCGCTGAAC ATCCTCAACG ATCAGAACGT CAAGGAGCTG CGCCCGGTCT GGACCATGTC CTTCGGCGGT GAGAAGCAGC GCGGCCAGCA GGCGCAGCCG CTGATCAAGG ACGGCGTTAT GTACGTCACC GCCTCCTATT CGCGGGTGTT CGCCGTCGAT GCGCGCACCG GGCGTGAGCT GTGGCAGTAC GAAGCCCGCT TGCCGGACGA CATTCGCCCT TGCTGCGACG TGATCAACCG TGGTGTCGCC CTGTACGACG ATCTGGTGAT CTTCGGCACC CTGGACGCCA AGCTGGTGGC GCTGAACAAG GACAGCGGCA AGGTGGTGTG GAGCAAGCGC GTGGCTGATC ACAAGGCCGG TTATTCGATC ACCGCCGCGC CGCTGGTGGT GGGTGGCAAG CTGATCACCG GCGTCTCCGG TGGCGAGTTC GGCGTGGTCG GCAAGATCGA AGCCTATGAC CCGAAGAATG GCGACCTGCT GTGGAGTCGT CCGACCGTCG AAGGCCACAT GGGCTACGTC TACAAGGACG GCAAGGCCGT CGAGAACGGT ATCAGCGGCG GCGAGGCCGG CAAGACCTGG CCGGGCGACC TGTGGAAGAC CGGCGGTGCC GCGCCCTGGC TGGGCGGCTA CTACGACGCC GACACCAACC TGCTGTTCTT CGGCACTGGC AACCCGGCGC CGTGGAACTC GCACCTGCGC CCGGGTGACA ACCTCTACTC GTCCTCGCGC CTCGCCCTGA ACCCGGACGA TGGCAGCATC AAGTGGCACT TCCAGACCAC CCCGCACGAC GGCTGGGACT TCGACGGCGT CAACGAGCTG GTCTCCTTCG ACTATCAGGA AGGCGGCAAG ACCATCAAGG CGGCGGCCAC CGCTGACCGT AACGGCTTCT TCTACGTGCT TGACCGCACC AACGGCAAGT TCATCCGCGG TTTCCCCTTC GTCGACAAGA TCACCTGGGC CAAGGGCCTG GACAAGAACG GCCGGCCGAT CTACGACGAC AGCAACCGCC CGGGTTCGCC GAGTGCGGCA GAGAAGGGCA AGAGCGTGTT CGCCGCGCCG GCTTTCCTCG GCGCGAAGAA CTGGATGCCC ATGGCCTACA GCCAGGACAC CGGCCTGTTC TATGTGCCGT CCAACGAATG GGGCATGGAC ATCTGGAACG AGGACATCGC CTACAAGAAG GGCGCGGCCT ACCTGGGCGC CGGCTTCACC ATCAAGCCGC TGAACGAGGA CTACATCGGT GTGCTGCGTG CCATCGATCC GAAGACCGGC AAGGAAGTCT GGCGCCACAA GAACTACGCG CCGCTGTGGG GCGGGGTACT GACCACCAAG GGCAACCTGG TGTTCACCGG TAACCCGGAA GGCTACCTGC AGGCGTTCAA CGCCAAGACC GGCGAGAAGG TCTGGGAATT CCAGACCGGC TCGGGCGTGA TCGGCTCGCC CGTGACTTGG GAGATGGACG GCGAGCAGTA CGTCTCGGTG CTCTCCGGCT GGGGTGGTGC GGTACCGCTG TGGGGCGGCG AGGTGGCCAA ACGCGTCAAG CACCTGAACC AGGGCGGCAT GCTGTGGACT TTCAAGCTGC CGAAGGAGCT GGTCGCCAAG CGCTGA
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Protein sequence | MKHAGLRQPF LLTALCAAML LPSAAALAVT DAEILKDATT TNEIVTNGLG LQGQRYSPLN ILNDQNVKEL RPVWTMSFGG EKQRGQQAQP LIKDGVMYVT ASYSRVFAVD ARTGRELWQY EARLPDDIRP CCDVINRGVA LYDDLVIFGT LDAKLVALNK DSGKVVWSKR VADHKAGYSI TAAPLVVGGK LITGVSGGEF GVVGKIEAYD PKNGDLLWSR PTVEGHMGYV YKDGKAVENG ISGGEAGKTW PGDLWKTGGA APWLGGYYDA DTNLLFFGTG NPAPWNSHLR PGDNLYSSSR LALNPDDGSI KWHFQTTPHD GWDFDGVNEL VSFDYQEGGK TIKAAATADR NGFFYVLDRT NGKFIRGFPF VDKITWAKGL DKNGRPIYDD SNRPGSPSAA EKGKSVFAAP AFLGAKNWMP MAYSQDTGLF YVPSNEWGMD IWNEDIAYKK GAAYLGAGFT IKPLNEDYIG VLRAIDPKTG KEVWRHKNYA PLWGGVLTTK GNLVFTGNPE GYLQAFNAKT GEKVWEFQTG SGVIGSPVTW EMDGEQYVSV LSGWGGAVPL WGGEVAKRVK HLNQGGMLWT FKLPKELVAK R
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