| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1904 |
|---|
| Symbol | |
|---|
| ID | 5110032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2095047 |
|---|
| End bp | 2096102 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640503135 |
|---|
| Product | putative RNA 2'-O-ribose methyltransferase |
|---|
| Protein accession | YP_001187398 |
|---|
| Protein GI | 146306933 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2933] Predicted SAM-dependent methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000223695 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.490603 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC TGTTTCTGCA TTGCCGCCCC GGTTTTGAGG GGGAGGTTTG CGCCGAGATC
ACCGACCTGG CGGCGCGTCT GGATGTGCCG GGCTACTCCA AGGCCAAGCC CGGTAGCGCG
TGCGCCGAGT TCGTCTGCAG CGAAGCGGCC GACGGCGAAC GCATGATGCG CAGTGTGCGC
TTCAACAGCC TGATTTTCCC CAGGCAATGG GCACGCGGTG GTTTCGTCAT GTTGCCGGAG
AGCGATCGCA TCAGTGTGCT GCTCGACGCT CTGGCCGACT ATCCGGTGTG CGGCAGCCTG
TGGCTGGAAG TGGTGGATAC CAACGACGGC AAGGAGCTCT CGACCTTCTG CAAGAAGTTC
GAGGCGCCGC TGCGCAAGGC GCTGCTCAAG GCCGGCAAGC TGGTGGACGA CGCCAGGAAG
CCGCGCCTGC TGCTGACCTT CAAGAGCGGC CGCGAGGTGT TCGCCGGCAT CGCCGAGGCG
GACAACCAGG CGATGTGGCC CATGGGCATT CCACGTCTGA AGTTTCCGCG CGAGGCGCCA
AGCCGCTCCA CGCTCAAGCT GGAGGAGGCC TGGCACCATT TCATTCCGCG CGAGCAGTGG
GATCAGCGCC TGGCGCCGGG CATGACCGCC GTCGACCTGG GCGCGGCCCC CGGTGGCTGG
ACCTGGCAGC TGGTCAATCG GGAGATTCGC GTCACAGCGG TGGACAACGG GCCGATGGCC
GAAAGCCTGA TGTATTCCGG CTTCGTCGTG CACCAGCGCG CCGATGGCTT CACCTTCCGC
CCGCGCCATC CGGTGCACTG GATGGTCTGC GACATCGTCG AGAAGCCGGC GCGCACGGCC
GCGATGATCG AGACCTGGCT GGGCGAAGGG CTGTGCCGCG AGGCGGTGGT CAATCTCAAG
CTGCCGATGA AGCAGCGTTA CGCCGAAGTG CGGCGCCTGC TCGATCGCAT CGAGTCGGGG
CTGGCCGAGC GCGGGCTGAA GGTCAGCATC GGCTGCAAGC AGCTGTATCA CGACCGTGAG
GAAGTGACCT GCCATCTGCG CCGTCACGGC AAATGA
|
|---|
| Protein sequence | MNTLFLHCRP GFEGEVCAEI TDLAARLDVP GYSKAKPGSA CAEFVCSEAA DGERMMRSVR
FNSLIFPRQW ARGGFVMLPE SDRISVLLDA LADYPVCGSL WLEVVDTNDG KELSTFCKKF
EAPLRKALLK AGKLVDDARK PRLLLTFKSG REVFAGIAEA DNQAMWPMGI PRLKFPREAP
SRSTLKLEEA WHHFIPREQW DQRLAPGMTA VDLGAAPGGW TWQLVNREIR VTAVDNGPMA
ESLMYSGFVV HQRADGFTFR PRHPVHWMVC DIVEKPARTA AMIETWLGEG LCREAVVNLK
LPMKQRYAEV RRLLDRIESG LAERGLKVSI GCKQLYHDRE EVTCHLRRHG K
|
|---|
| |