| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1872 |
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| Symbol | |
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| ID | 5110001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2063547 |
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| End bp | 2064557 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640503103 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001187367 |
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| Protein GI | 146306902 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0528646 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGACG ACAAAGTATT GATGATCACC GGTGGCACCG GTTCCTTTGG GCATACGGTG
TTGCGGCGCT TCCTCGATAC CAATGTGCGT GAGATTCGCA TCTTCTCCCG CGACGAGAAG
AAGCAGGAAG ACATGCGCAT TGCCCTGGCC AATGACAAGG TCAAATTCTA CATCGGTGAT
GTCCGTGACT GTGACAGTCT GAAGCAGGCC ATGGTCGGTG TTGATTACAT CTTCCACGCG
GCGGCGCTCA AGCAGGTGCC GTCCTGTGAG TTCTATCCGA TGGAGGCGGT GCGTACCAAC
GTCAATGGCA CCGAGAACGT GCTGAATGCC GCCATTGCCA GCGGCGTGAA GCGCGTGGTG
GTGTTGTCCA CTGACAAGGC GGTGTATCCG ATCAATGCCA TGGGCATTTC CAAGGCCATG
GCCGAAAAGC TGATGGTCGC CAAGTCGCGG ATGATTCCAG AAGGCGGTAC CGTGGTTTGC
GCCACCCGTT ACGGTAACGT GATGGCCTCA CGCGGCTCGG TAATCCCTCT GTTCATCGAC
CAACTGCGCA GTGGTGAGCC GCTGACCGTG ACCGACCCGC AGATGACGCG CTTTCTGATG
TCACTGGAGG ACTCGGTCGA CCTGGTGCTG CATGCTTTCG AGCATGGCGA GCAGGGCGAT
CTGTTCGTGC AGAAGGCGCC GGCCTCCACC GTCGGCGATC TGGCCCAGGC GCTCAAGGAA
CTGTTCGGTC ACGACAACCC GGTACGTGTC ATCGGTACCC GGCACGGCGA GAAGCTCTAC
GAATCCCTGG TTTCGCGCGA GGAGATGGCC AAGGCCGAGG ACATGGGGCG TTACTACCGT
ATTCCGGCCG ACAATCGCGA TCTCAACTAC AAGAAGTATT TCGTCGAGGG CGAGGAGAAA
ATCTCCGAGC TGGACGACTA CACCTCACAC AATACCCATC GTCTGGACGT ACCCGGCATC
AAGGAGCTCC TGCTCAAGCT CGATTACATC AAGGAGCAGC TCGATGCTTA A
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| Protein sequence | MFDDKVLMIT GGTGSFGHTV LRRFLDTNVR EIRIFSRDEK KQEDMRIALA NDKVKFYIGD
VRDCDSLKQA MVGVDYIFHA AALKQVPSCE FYPMEAVRTN VNGTENVLNA AIASGVKRVV
VLSTDKAVYP INAMGISKAM AEKLMVAKSR MIPEGGTVVC ATRYGNVMAS RGSVIPLFID
QLRSGEPLTV TDPQMTRFLM SLEDSVDLVL HAFEHGEQGD LFVQKAPAST VGDLAQALKE
LFGHDNPVRV IGTRHGEKLY ESLVSREEMA KAEDMGRYYR IPADNRDLNY KKYFVEGEEK
ISELDDYTSH NTHRLDVPGI KELLLKLDYI KEQLDA
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