Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1867 |
Symbol | |
ID | 5106571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2057754 |
End bp | 2059055 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640503098 |
Product | transposase, IS204/IS1001/IS1096/IS1165 family protein |
Protein accession | YP_001187362 |
Protein GI | 146306897 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3464] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.212682 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACAATC TTACCTTTTC TAGCCCTGAT CTTTCCAGCT TTTGCCAACT GAATAACCTC GGCCTGACTG CCACTGGACA ACATCTTTGT GCAGAGCGCG CCGTCATCGA ATGTCGTTTA ACCAAAGCAC CCGAGCCATG CCCCAAGTGC GGGGCTGCTG GTGTTTCACG CGGTACTGTC GATAGGCATC TTGCTCACAC ACCTTACGGA CAACGACCAA CCAGATTGCT GCTGCGTATC CGTCGCTGGC GTTGTGCTTG CGGCTGTTTC TGGCATGAAG ATACAAACAG TGCAGCACCT CCACGTTCAA AGCTTTCATA TGGGGCGATA CGCTGGGCAT TAGCTGCCAT CGTGCTGGAT CATCTGTCGG TATCTCGTGT TGCGAGCCAG CTTGATGTTG CATGGCACAC CGCTAATAAT GCCATTATCA ACGAAGGACG GCGCCTGCTT TTTAATGACT CGACACGTTT TGACGGTGTG ACCGTGCTGG GCGTGGATGA GCATGTTTGG CGACATACAC GCTGTGGTGA CAAGTACGTC ACCATCGTGG TTGACCTTAC GCCCGTGCGT AACAAAAACG GGCCGGCCCG CTTGCTCGAT GTGCTGGAAG GCCGCTCCAA ACAAGCCTTT AAGCAATGGC TACAGAGTCG CCCCAAATCG TGGCGTGACC AGATCGAAAG CATTGCCATG GACGGTTTTA CGGGGTTTAA ATCTGCAGCG CAAGAAGCCC TGCCTCAAGC CCAAACCGTG CTGGATCCTT TCCATGTCGT GCGCTGGGCA AGCAACATGC TGGATGAATG CCGCCGGCGT GTGCAACACG ACATCCTGGG CCGCAGAGGG CGTAAAAATG ACCCGCTCTA CAAAAGCCGT CGAACGCTAC TGACTCGGAT CAGCTACCTG TCTGACGCCA ACAAAAAGCA ACTGTTCCAG CTGTTTGCAG ATGAGCACCA CCTCGAAGTG GATTGCACCT GGAGCATGTA CCAACGGGTG GTCAGCGCCT ACAACGAGCC GGATCGAAAA CGTGGTAAAA AACTCATGGA AGAGGTCATA AATATCATTA CAGCCAGCGA CTTGCCCAAA GCGCTCATCG AGGTGAAAGG CTTGGGGGAA ACGCTGAAAA AATACGCTGA GAGCATCCTT GCCTACTTCG ACCGGCCAGG AACCAGCAAC GGTCCAACAG AAGCTATCAA CGGGCGACTT GAGCACTTAC GAGGTACCGC CTTGGGCTTT AGAAATTTAA CCAATTACAT AGCCAGGTGC TTGCTGAAGT CAGGAGGGTT TAGAAATCAG CTACACCCTT AA
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Protein sequence | MNNLTFSSPD LSSFCQLNNL GLTATGQHLC AERAVIECRL TKAPEPCPKC GAAGVSRGTV DRHLAHTPYG QRPTRLLLRI RRWRCACGCF WHEDTNSAAP PRSKLSYGAI RWALAAIVLD HLSVSRVASQ LDVAWHTANN AIINEGRRLL FNDSTRFDGV TVLGVDEHVW RHTRCGDKYV TIVVDLTPVR NKNGPARLLD VLEGRSKQAF KQWLQSRPKS WRDQIESIAM DGFTGFKSAA QEALPQAQTV LDPFHVVRWA SNMLDECRRR VQHDILGRRG RKNDPLYKSR RTLLTRISYL SDANKKQLFQ LFADEHHLEV DCTWSMYQRV VSAYNEPDRK RGKKLMEEVI NIITASDLPK ALIEVKGLGE TLKKYAESIL AYFDRPGTSN GPTEAINGRL EHLRGTALGF RNLTNYIARC LLKSGGFRNQ LHP
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