Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1841 |
Symbol | |
ID | 5109971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2026864 |
End bp | 2028021 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503073 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_001187337 |
Protein GI | 146306872 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAGC ACGAACAACC GCGCCCTGCA GGCGAGAAAC TGCAGAAAGT CCTGGCCCGC ATGGGCCTCG CGTCCCGTCG CGAAATCGAA ACCTGGATCG GCGAAGGCCG GGTCAAGGTC AATGGCGCTG CTGCCACCCT GGGCCAGCGT GTCGATGCCA ACGACGCCAT CGCCCTCGAT GGTCGCCTGC TCAAGCGCGA AGAGATCACC GGCTCGGTGC GTCGCGTTCT GATCTACAAC AAGCCCGATG GCGAGATCTG CACCCGTGAC GACCCGGAAG GCCGTCCTAC CGTGTTCGAC CGTCTGCCAC GCCCCAAGGA AGGCCGCTGG ATCAATATCG GTCGCCTCGA CATCAACACC ACCGGCCTGC TGCTGTTCAC CACTGACGGT GAACTGGCCA ACCGCCTGAT GCACCCCTCC TACCAGATGG ACCGCGAGTA CGCGGTGCGT GTGCGCGGCG AGGTGACCGA GGAGATGCTG GAGAACCTCA AGAAAGGCGT GATGCTCGAA GACGGCCCGG CCAAGTTCAC CGACATCAAG GAAGCGCCGG GTGGCGAGGG CTTCAACCAC TGGTATCACT GCGTGGTGAT GGAAGGTCGC AACCGCGAGG TGCGCCGTCT GTGGGAATCC CAGGGGCTGG TGGTCAGCCG TCTGAAGCGC GTGCGCTTCG GTCCGGTATT CCTGACGTCA GACCTGACCA TGGGCCGCTG GCGTGAGATG GATCAGCGCG AAGTGGACAT CCTCAGCGCC GAGGTGGGAC TGGCCCCGCA GGCGCTGCCG GCGATGAAGG AGAAAACGCG CGAGAAGCTC GACCGCCTGC AGCGCAAGTC GGCCAAGCCG GTGGAGGTGC GTGGCAAGCG CGTGCTGCGT CCGGCCAAGG ACGAAGCCGG TGCCGAAGGC GCTCGCCCGA GCCGTGCGCC GCGCCGTGAC GATGGCGAGC AGCGCGCTCC ACGCGGCCCG CGCAAGGAAG GCGGCGAGCG TCGCGAAAGC GGTCGCGGTA CGCCGGTGGC CGAGCGTCCG GGGGACGTGA AGAAACGTCA GCCGCGCCCT GCGGTGGAAC TGGCCGACCG CCCGGCGCGC AAGCCGCGTC CGGCAGCACC GGGCAAGCGT CCGCCGGCTG GCGACGGCCA GCGTCCGGGC TTCGGCCGCA AGCGCTGA
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Protein sequence | MTEHEQPRPA GEKLQKVLAR MGLASRREIE TWIGEGRVKV NGAAATLGQR VDANDAIALD GRLLKREEIT GSVRRVLIYN KPDGEICTRD DPEGRPTVFD RLPRPKEGRW INIGRLDINT TGLLLFTTDG ELANRLMHPS YQMDREYAVR VRGEVTEEML ENLKKGVMLE DGPAKFTDIK EAPGGEGFNH WYHCVVMEGR NREVRRLWES QGLVVSRLKR VRFGPVFLTS DLTMGRWREM DQREVDILSA EVGLAPQALP AMKEKTREKL DRLQRKSAKP VEVRGKRVLR PAKDEAGAEG ARPSRAPRRD DGEQRAPRGP RKEGGERRES GRGTPVAERP GDVKKRQPRP AVELADRPAR KPRPAAPGKR PPAGDGQRPG FGRKR
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