Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1835 |
Symbol | |
ID | 5109965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2022322 |
End bp | 2022990 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640503067 |
Product | Sua5/YciO/YrdC/YwlC family protein |
Protein accession | YP_001187331 |
Protein GI | 146306866 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0009] Putative translation factor (SUA5) |
TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.225419 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.414571 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACAGCC ACCCACTGTC CCTTCATGAG CAGGATGCAA GTGTGAGCCA ATTCTTCCAG GTCCACCCGG AGAACCCCCA GGCGCGCCTG ATAAAACAGG CCGTGGAAAT CATTCGCAGT GGCGGGGTGG TGGTCTATCC GACCGATTCC TCCTACGCCC TGGGTTGCGC CATCGGCGAC AAGAATGCGG TCGAGCGCAT TCGTCGCCTG CGTCAGCTCG ACGACAAGCA CAACTTCACC CTGGTCTGCC GCGACCTGTC GCAGATCGGC CTGTTCGCCA AGGTGGACAC CGCCGCCTTC CGTCTGCTGA AGAATCACAC GCCGGGCCCC TACACCTTCA TCCTCAATGC CACCCGTGAA GTGCCGCGCA TGCTGCTGCA TCCCAAGCGC CGCACCATCG GCCTGCGCGT GCCCAGCCAT CCGATCGCCC TGGCATTGCT CGAGCAGCTC GGCGAGCCGC TGATGAGCGT CAGCCTGATT CTGCCGGGTG ACGAGCTGCC GATGTCCGAC CCCTACGAGA TGCGCCAGAT ACTCGAACAT CAGGTCGAGC TGATCATCGA CGGCGGCTTC GGCGGCCTGG AAGCCTCCAC CGTGGTCAAC CTGGCCGACG ATACGCCGGA GATCCTGCGG GTGGGCTGTG GCGATCCGTC GCCATTCGTC GATCTGTAA
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Protein sequence | MHSHPLSLHE QDASVSQFFQ VHPENPQARL IKQAVEIIRS GGVVVYPTDS SYALGCAIGD KNAVERIRRL RQLDDKHNFT LVCRDLSQIG LFAKVDTAAF RLLKNHTPGP YTFILNATRE VPRMLLHPKR RTIGLRVPSH PIALALLEQL GEPLMSVSLI LPGDELPMSD PYEMRQILEH QVELIIDGGF GGLEASTVVN LADDTPEILR VGCGDPSPFV DL
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