| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1802 |
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| Symbol | |
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| ID | 5109932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1979108 |
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| End bp | 1980466 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503034 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001187298 |
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| Protein GI | 146306833 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.531318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.520041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCGA CCCAGAGCCT CGGCAACTAC TTCGGCAGCC TGCGCGAAAA GCGCCAGGAC
ACCGAATTCA TGCCGGAAGT GGAAGGCGCC ATTCTGGAGG ACTCTCCCTG GCTTAGCCGC
GCCACCGTCT GGGTCGTCAG TGCCTGCCTG CTCGCCGCGC TGGTGTGGGC GCATTTTGCG
GTGTTGGAAG AAGTCACCAC CGGCGAAGGC AAGGCCATCC CGTCGAGCAA GGTGCAGGTG
ATCCAGAACC TGGAGGGCGG TATCGTCAGC GAGATATTCG TGCGCGAAGG TCAGGTGGTG
GACAAAGGCG ACACCCTGCT GAGACTGGAC GACACGCGCT TTCTCTCCAA TCGCGGTGAA
ACCGAAGCCG ACCGACTGGC GCTGATCGCC CGCCTCGAAC GCCTCGGTGC GGAAGCCGAA
GGGCGGGCGC CGCAACTGCC CGAAGAGATC ACCCGCGACG CCCCGCAACT GGCCGAGGAC
CAGTTGGCCC TGTACCGCTC GCGCCAGCAA CGTCTGCGCA GCGAGCAACG CACCCTGGGC
GAGCAGCTGC GGCAGAAGGA GCAGGAGCTC GCCGAATTTC GCTCCAAGGC CCAGCAATAC
CGCTCCAGCC TCGGCCTGCT GCAACAGGAA CTGAACATGT CGCAGCCGCT GGTGGCCTCG
GGGGCGATTT CCGAGGTCGA GGTGCTGCGC CTGCGCCGCA GCGTGGTGGA AGTGCGCGGC
TCGCTGGAGG CCACCAACCT GGCCATCCCG CGCGCCGAAG CGGCGATGAG CGAGATCAAG
AGCAAGATGG AGGAATCCGA ACTGGCGTTC CGCGCCGAAG CCTTCAAGGA GCTCAACGAG
GTGCGCACCG AACTGCAGAA GATCACCGCC ACCAGCGTCG CCATTCAGGA CAAGGTCACC
CGGACCACCG TGACTTCGCC GGTACGCGGC GTGATCAAGC AGCTCAAGGT CAACACCATC
GGCGGCGTGG TGCAGCCCGG CAGCGACATG CTGGAAATCG TGCCGCTGGA CGACAGTCTG
CTGATCGAAG CCAAGGTGCG CCCGCAGGAC GTGGCCTTCC TCCACCCTGG GCAGAAGGCG
ATGGTCAAGT TCACCGCCTA CGACTACACC ATCTACGGCG GTCTCAAGGC CAATCTGGAG
CTGATCAGCG CCGACACCAT CAGCGACGAG GAAGGCAACA GCTTCTATCT GATCCAGGTG
CGAACCGATA AAAGCCATCT CGGCAGCGAG GAGAATCCGC TGCTGATCAT CCCCGGCATG
GTCGCCACCG TGGACATCAT CACCGGCGAG AAGAGCGTGC TGGCCTACCT GCTCAAGCCG
GTGCTCAAGG CACGCTCGGA GGCCATGCGC GAGCGTTGA
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| Protein sequence | MQATQSLGNY FGSLREKRQD TEFMPEVEGA ILEDSPWLSR ATVWVVSACL LAALVWAHFA
VLEEVTTGEG KAIPSSKVQV IQNLEGGIVS EIFVREGQVV DKGDTLLRLD DTRFLSNRGE
TEADRLALIA RLERLGAEAE GRAPQLPEEI TRDAPQLAED QLALYRSRQQ RLRSEQRTLG
EQLRQKEQEL AEFRSKAQQY RSSLGLLQQE LNMSQPLVAS GAISEVEVLR LRRSVVEVRG
SLEATNLAIP RAEAAMSEIK SKMEESELAF RAEAFKELNE VRTELQKITA TSVAIQDKVT
RTTVTSPVRG VIKQLKVNTI GGVVQPGSDM LEIVPLDDSL LIEAKVRPQD VAFLHPGQKA
MVKFTAYDYT IYGGLKANLE LISADTISDE EGNSFYLIQV RTDKSHLGSE ENPLLIIPGM
VATVDIITGE KSVLAYLLKP VLKARSEAMR ER
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