| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1735 |
|---|
| Symbol | |
|---|
| ID | 5109315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1912412 |
|---|
| End bp | 1914655 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640502966 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001187231 |
|---|
| Protein GI | 146306766 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAGG TAAGAGCGCA TCAGCCAGTC AACGATGACG GCAGCATCAA TCTCGAGGCC
TGGCTGGATC ATGTCGCCAG CGTCGACCCG GCGCTGGATC GCCAGGCACT GCAAGAGGCC
TGCGAATTCG CCCGCGATCT GGAGCAGCAG GCCAACACCA CCCAGCATCA CTGGAGCGAG
GGCGCTTCGA CGTTCCGCGC CGGCCTCGAC ATCGCGGAAA TCCTCGCCGA CCTCAAGCTC
GATCAGGATT CGCTGGTCGC GGCGGTCATC TATCGTGGCG TGCGCGAGGG CAAGATCACC
CTGGCCGCGG TGCATCAGCG TTTCGGTCCG GTGGTGGCCA AGCTGATCGA AGGCGTGCTG
CGCATGGCGG CGATCAGCGC CAGTATCAAT CCGCGTGAAT CGGTGGTGGT CGGCTCGCAG
ACGCAGGTGG AGAACCTGCG CAAGATGCTG GTGGCCATGG TCGACGACGT GCGCGTGGCG
CTGATCAAGC TGGCCGAACG CACCTGCGCC ATCCGCGCGG TCAAGGAAGC CGACGAAGAG
AAACGCCAGC GTGTGGCGCG CGAGGTGTTC GACATCTATG CACCGCTGGC CCACCGCCTG
GGCATCGGCC ATATCAAGTG GGAGCTGGAA GACCTGTCCT TCCGCTACCT GGAGCCGGAG
CAGTACAAGC AGATCGCCAA GCTGCTGCAC GAGCGCCGTC TGGATCGCGA GCAGTACATC
AACGACGCCA TGGCCCATCT GCGCCAGGAG CTGGAAGCCA CCGGCATCAA GGCCGACATC
AGCGGCCGGG CGAAACACAT CTATTCGATC TGGCGCAAGA TGCAGCGCAA GGGCCTGCAG
TTCAGCCAGA TCTACGACGT GCGTGCGGTG CGCGTGCTGG TGCCGGAGGT GCGCGACTGC
TACACCACCC TGGGCATCGT GCACACCCTG TGGCGGCACA TTCCCAAGGA GTTCGACGAC
TACATCGCCA ACCCCAAGGA GAACGGCTAC CGCTCGCTGC ACACCGCCGT GCTGGGCCCG
GAAGGCAAGG TGCTGGAAGT GCAGATCCGC ACCCACTCCA TGCACGAAGA AGCCGAGCTG
GGCGTGTGCG CGCACTGGCG CTACAAGGGC ACCGACGTCA AGTCCGGCTC CAACCACTAT
GAAGAGAAGA TTTCCTGGCT GCGTCAGGTT ATCGAGTGGC ACGAGGAGCT GGGCGATATC
GGCGGTCTGG CCGAACAGCT GCGCGTGGAC ATCGAGCCGG ATCGGGTCTA CGTCTTCACC
CCCGACGGCC ACGCCATCGA CCTGCCCAAG GGCGCCACGC CGCTGGACTT CGCCTACCGC
GTGCACACCG AGATCGGTCA CAACTGCCGT GGCGCCAAGA TCAACGGGCG CATCGTGCCG
CTGACCTACA GCCTGCAGAC CGGCGAGCAG GTGGAGATCA TCACCAGCAA GCAGGGCTCG
CCAAGTCGCG ACTGGCTCAA CCCCAACCTG GGCTACGTCA CCACCAGCCG CGCGCGGGCC
AAGATCGTCC ACTGGTTCAA GCTGCAGGAC CGCGACCAGA ACGTCGCGGC CGGCAAGCAG
CTGCTCGAAC GCGAGCTGGC GCGCCTGGCC CTGCACGGCG TGGATTTCGA CAAGCTGGCC
GAGAAGGCCA ATCTGAAGAC CGCCGAGGAC CTGTTCGCGG CGCTGGGTGC CGGCGACGTG
CGCCTGGCGC ATGCGGTCAA CCTGGCGCAG CAACTGGTCG AACCGGAGCG CAGCAGCGAG
CAGCTCGAAC TGATCCCGCG CAAGGCGCAG GGCTTCAAGC CGGGCAAGCG CGGCGACATC
CAGATCCAGG GTGTCGGCAA TCTGCTGACG CAGATGGCCG GCTGCTGCCA GCCGCTGCCG
GGAGATCCCA TCGTCGGCTA TATCACCCTC GGTCGTGGCG TCACCATTCA TCGCCAGGAT
TGCCCCACGG CGCTGCAGCA GTCCGCACGC GAGCCGGAGC GGATGATCCA GGTGAGCTGG
GGGCCGGTGC CGGTGCAGAC CTACCCGGTG GAGATCGTCA TCAAGGCCTA CGACCGCTCC
GGTCTGCTGC GTGACGTCAC TCAGGTGCTG CTCAACGAGA AGCTCAACGT GCTGGCGGTC
AACACGCGCT CGAACAAGGA GGACAACACC GCCTCCATGT CGATCACCGT GGAGATTCCT
GGGCTCGATG CGCTTGGCCG TCTGCTGGCG CGTATCGGCC AGTTGCCCAA TATCATCGAG
GCGCGTCGCC ACCGCGTGGC CTAG
|
|---|
| Protein sequence | MVQVRAHQPV NDDGSINLEA WLDHVASVDP ALDRQALQEA CEFARDLEQQ ANTTQHHWSE
GASTFRAGLD IAEILADLKL DQDSLVAAVI YRGVREGKIT LAAVHQRFGP VVAKLIEGVL
RMAAISASIN PRESVVVGSQ TQVENLRKML VAMVDDVRVA LIKLAERTCA IRAVKEADEE
KRQRVAREVF DIYAPLAHRL GIGHIKWELE DLSFRYLEPE QYKQIAKLLH ERRLDREQYI
NDAMAHLRQE LEATGIKADI SGRAKHIYSI WRKMQRKGLQ FSQIYDVRAV RVLVPEVRDC
YTTLGIVHTL WRHIPKEFDD YIANPKENGY RSLHTAVLGP EGKVLEVQIR THSMHEEAEL
GVCAHWRYKG TDVKSGSNHY EEKISWLRQV IEWHEELGDI GGLAEQLRVD IEPDRVYVFT
PDGHAIDLPK GATPLDFAYR VHTEIGHNCR GAKINGRIVP LTYSLQTGEQ VEIITSKQGS
PSRDWLNPNL GYVTTSRARA KIVHWFKLQD RDQNVAAGKQ LLERELARLA LHGVDFDKLA
EKANLKTAED LFAALGAGDV RLAHAVNLAQ QLVEPERSSE QLELIPRKAQ GFKPGKRGDI
QIQGVGNLLT QMAGCCQPLP GDPIVGYITL GRGVTIHRQD CPTALQQSAR EPERMIQVSW
GPVPVQTYPV EIVIKAYDRS GLLRDVTQVL LNEKLNVLAV NTRSNKEDNT ASMSITVEIP
GLDALGRLLA RIGQLPNIIE ARRHRVA
|
|---|
| |