| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1713 |
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| Symbol | rimO |
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| ID | 5109687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1884936 |
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| End bp | 1886258 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502942 |
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| Product | ribosomal protein S12 methylthiotransferase |
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| Protein accession | YP_001187209 |
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| Protein GI | 146306744 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00416624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0683771 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACCG CCACACCGAA AGTCGGCTTC GTTTCCCTGG GTTGCCCCAA GGCCACCGTC
GACTCCGAAC GCATCCTGAC CCAGCTGCGC ATGGAAGGTT ACGAGATCGT ACCGACCTAC
CAGGATGCCG ACGTGGTGGT GGTCAATACC TGCGGCTTCA TCGACAGCGC CAAGGCCGAG
TCGCTGGACG CCATCGGCGA GGCCATCGCC GAGAACGGCA AGGTGATCGT CACCGGCTGC
ATGGGCGTGG CCGAGGACAG CATCCGCGAC GTGCACCCCA GCGTACTGGC CGTCACCGGC
CCGCAGCAGT ACGAGCAGGT GGTCAGCGCG GTGCATGAAG TGGTCCCGCC GAAGACCGAG
CACAACCCGC TGATCGACCT GGTGCCGCCG CAGGGCATCA AGCTCACGCC GCGTCACTAC
GCCTACCTGA AGATTTCCGA GGGCTGCAAC CACAGCTGCA GCTTCTGCAT CATTCCGTCG
ATGCGTGGCA AGCTGGTCAG CCGCCCGGTG GGCGATGTGC TCAGCGAGGC CGAGCGCCTG
GTCAAGGCCG GGGTCAAGGA GCTGCTGGTG ATCAGCCAGG ACACCAGCGC CTACGGCGTC
GACATGAAGT ACAAGCTGGA CTTCTGGAAC GGCCAGCCGG TGAAGACGCG CATGCTCGAG
CTGTGCGAGG CGCTGTCGTC GATGGGCGTG TGGGTGCGCC TGCACTACGT CTACCCCTAC
CCCAACGTCG ACGACGTGAT CCCGCTGATG GCCGCCGGCA AGCTGCTGCC GTACCTGGAT
ATACCCTTCC AGCACGCCAG CCCGAAAGTG CTCAAGTCGA TGAAGCGCCC GGCCTTCGAA
GACAAGACCC TGGCGCGCAT CAAGAAGTGG CGCGAGATTT GCCCGGAGCT GACCATCCGT
TCCACCTTCA TCGTCGGCTT CCCCGGCGAG ACCGAGGAAG ACTTCCAGTA CCTGCTGGAC
TGGCTGACCG AGGCGCAGCT CGACCGCGTC GGCTGCTTCC AGTACTCGCC GGTTGAAGGC
GCGCCGGCCA ACGACTTGGG CCTGGAGCCG GTACCGGATG ACGTCAAGCA GGAACGCTGG
GAGCGCTTCA TGGCGCATCA GCAGGCGATC AGCTCGGCAC GCCTGCAGGC CAAGATTGGC
CTGGAAATGG ACGTGCTGGT CGATGAAGTG GACGGCGAAG GTGCGGTGGC TCGCTCCTGG
GCCGACGCCC CTGAGATCGA CGGCAGCGTG TTCATCGACT CCACCGCCGT CAAGCCGGGC
GACAAGGTGC GCGTGCGCAT CGTCGACGCC GATGAATACG ACATGTGGGG CGAGCTGGTG
TAA
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| Protein sequence | MSTATPKVGF VSLGCPKATV DSERILTQLR MEGYEIVPTY QDADVVVVNT CGFIDSAKAE
SLDAIGEAIA ENGKVIVTGC MGVAEDSIRD VHPSVLAVTG PQQYEQVVSA VHEVVPPKTE
HNPLIDLVPP QGIKLTPRHY AYLKISEGCN HSCSFCIIPS MRGKLVSRPV GDVLSEAERL
VKAGVKELLV ISQDTSAYGV DMKYKLDFWN GQPVKTRMLE LCEALSSMGV WVRLHYVYPY
PNVDDVIPLM AAGKLLPYLD IPFQHASPKV LKSMKRPAFE DKTLARIKKW REICPELTIR
STFIVGFPGE TEEDFQYLLD WLTEAQLDRV GCFQYSPVEG APANDLGLEP VPDDVKQERW
ERFMAHQQAI SSARLQAKIG LEMDVLVDEV DGEGAVARSW ADAPEIDGSV FIDSTAVKPG
DKVRVRIVDA DEYDMWGELV
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