| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1663 |
|---|
| Symbol | |
|---|
| ID | 5109637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1824627 |
|---|
| End bp | 1825505 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640502891 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_001187159 |
|---|
| Protein GI | 146306694 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCGG GCAGTATGGT GGCACTGGTC ACGCCCATGG ATGCACAGGG TGGTCTGGAT
TGGGAGGCCC TGAGCAAATT GGTGGATTTC CACCTGCAGG AGGGCACCAA TGCCATCGTC
GCGGTCGGCA CCACGGGTGA GTCCGCCACG CTGGACGTGG GTGAGCACAT CGAAGTGATC
AAGCGCGTGG TCGATCAGGT GGCCGGGCGC ATCCCGGTGA TCGCCGGCAC CGGCGGCAAC
TCCACCCGCG AGTCGGTGGA ACTGACCCGC GCAGCCAAGG AGGTCGGCGC CGATGCCTGC
CTGCTGGTGA CCCCGTACTA CAACAAACCG ACCCAGGAAG GCCTGTACCT GCACTTTCGC
CACATCGCCG AAGCCGTCGC CATTCCGCAG ATCCTCTACA ACGTGCCGGG CCGTACCGTG
TGCGACATGC TGCCGGAGAC TGTCGAGCGT CTGTCGAAGA TCGACAACAT CATCGGCATC
AAGGAAGCAA CCGGCGACCT GCAGCGCGCC CAGGAAGTGC TGGATCGCGT CAGCAAGGAT
TTCCTCGTCT ACTCCGGCGA TGACGCCACC GCCGTCGAGC TGATGCTGCT GGGCGGCAAG
GGCAACATCT CCGTCACCGC CAACGTCGCG CCGCGCGCCA TGAGCGATCT GTGCGCCGCC
GCCATGCGTG GCGAAGCCGC CATCGCCCGC GCCATCAACG ACCGCCTGAT GCCCCTGCAC
AAGGCGCTGT TCCTCGAGTC CAACCCGATT CCGGTGAAAT GGGCGCTGCA CGAAATGGGC
CTGATGGGCG ACGGCATCCG TCTGCCGCTG ACCTGGCTCA GCCCGCGCTG TCACGAACCG
CTGCGCCAGG CCATGCGCCA GTGCGGCGTA TTGGCTTAA
|
|---|
| Protein sequence | MIAGSMVALV TPMDAQGGLD WEALSKLVDF HLQEGTNAIV AVGTTGESAT LDVGEHIEVI
KRVVDQVAGR IPVIAGTGGN STRESVELTR AAKEVGADAC LLVTPYYNKP TQEGLYLHFR
HIAEAVAIPQ ILYNVPGRTV CDMLPETVER LSKIDNIIGI KEATGDLQRA QEVLDRVSKD
FLVYSGDDAT AVELMLLGGK GNISVTANVA PRAMSDLCAA AMRGEAAIAR AINDRLMPLH
KALFLESNPI PVKWALHEMG LMGDGIRLPL TWLSPRCHEP LRQAMRQCGV LA
|
|---|
| |