Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1622 |
Symbol | |
ID | 5109280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1787081 |
End bp | 1788061 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640502850 |
Product | signal peptide peptidase SppA, 36K type |
Protein accession | YP_001187118 |
Protein GI | 146306653 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.37253 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGATG AGTGGAAGTC ATCGGCGAAG TCCGAGGGCG AGGATGCCAA AAGCTGGAAG CTGCTGGAGA AGGCGCTGCT GTCCAGTGTG CAGGAGCAGC GTCGTTCGCG GCGTTGGGGG ATTTTCTTCA AGCTGCTGAC GTTTCTTTAT CTGTTCGGGG CGTTGGCGCT GTTCTTGCCG GCGCTCGATC TGAAGAAGGG GGCGTCGACC GGTGCGCATA CGGCCCTGAT CGAGATTCGC GGGATGATCG CCGATCAGGA GCAGGCCAGT GCCGACAAGG TGGTGGGCAG TCTGCGTGCA GCCTTCGAGG ACGCCAACAC CAAGGGTGTG ATCCTGCGTA TCAATAGCCC TGGCGGCAGT CCGGTGCAGT CCGGCTACAT CTATGACGAG ATTCGCCGCT TGCGCGGCGA GCATCCGCAG ATCAAGGTCT ACGCGGTGAT TACCGATCTG GGCGCGTCCG GGGCCTACTA CATCGCCAGT GCGGCCGACG AGATCTACGC GGACAAGGCC AGTCTGGTCG GCTCCATCGG TGTTACGGCG GCCAGCTTCG GCTTCGTCGA AACCATGGAG AAGCTCGGTG TCGAGCGTCG CGTCTACACC TCGGGTGAGC ACAAGGCGTT TCTCGATCCG TTCCAGCCGC AGAAGGAAGA GGAAACCCGC TTCTGGAAGG GGGTGCTGGA TACCACTCAC CGCCAGTTCA TCGAAAGCGT GAAGCAGGGG CGCGGTGATC GTCTCAAGGC AGATGCGCAT CCCGAGCTGT TCTCGGGGTT GGTCTGGTCG GGCGAGCAGG CGCTGCAGCT GGGGCTGGTC GATGCGCTGG GAAGTGCCAG TTACGTCGCT CGCGAGGTGA TTGGCGAGAA GGAGATGGTC GACTTCACCG TGCGAGACAC GCCGTTCGAT CGCTTCGCCA AGCGCCTGGG TACCAGCGTG GCTGATCGCA TTGCGTTGTG GATGGGTTTC CAGGGGCCGA CGCTGCGCTG A
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Protein sequence | MSDEWKSSAK SEGEDAKSWK LLEKALLSSV QEQRRSRRWG IFFKLLTFLY LFGALALFLP ALDLKKGAST GAHTALIEIR GMIADQEQAS ADKVVGSLRA AFEDANTKGV ILRINSPGGS PVQSGYIYDE IRRLRGEHPQ IKVYAVITDL GASGAYYIAS AADEIYADKA SLVGSIGVTA ASFGFVETME KLGVERRVYT SGEHKAFLDP FQPQKEEETR FWKGVLDTTH RQFIESVKQG RGDRLKADAH PELFSGLVWS GEQALQLGLV DALGSASYVA REVIGEKEMV DFTVRDTPFD RFAKRLGTSV ADRIALWMGF QGPTLR
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