| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1598 |
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| Symbol | |
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| ID | 5109256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1763589 |
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| End bp | 1764257 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640502826 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit D |
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| Protein accession | YP_001187094 |
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| Protein GI | 146306629 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
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| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0000424446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0207177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCAAC CGACTATCAA AGAAGTCCTG CTCAACCCGG TCTTCAACAA CAACCCCATC
GGCCTGCAGA TTCTCGGGAT CTGCTCGGCC CTGGCAGTGA CCTCGAACCT GCAGACCGCG
CTGGTGATGT CCGCCGCGCT GACTCTGGTG TGCGGTTTCT CCAACCTGTT CATCTCGATG
ATCCGCAGCC AGATCCCCGG CTCGATCCGC ATGATCGTGC AGATGGTGAT CATCGCCTCG
CTGGTGATCG TGGTCGACCA GGTACTCAAG GCTTATGCCT TCAGTCTGTC CAAGCAGCTG
TCGGTGTTCG TCGGTCTGAT CATCACCAAC TGCATCGTGA TGGGTCGTGC CGAAGCGTTC
GCCATGCAGA ACCCGCCGGT GCTGTCGTTC TTCGACGGTA TCGGTAACGG CCTGGGCTAC
AGCGCCATGC TGGTGGCCCT GGGCGTGATC CGCGAGCTGT TCGGCGCGGG CAAGCTGATG
GGCTACGAGA TTTTCTCGGT GGTCAACGAC GGTGGCTGGT ACCAGCCCAA CGGTATGCTG
CTGCTGCCAC CTTCGGCCTT CTTCCTGATC GGCCTGTTCA TCTGGGGCAT CCGTAGCTGG
AAGAAGGATC AGATCGAGAA GAATGTCTAC AAGATGGCGC CTCAGGTATC CAGCAAGGAG
GCCTATTAA
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| Protein sequence | MSQPTIKEVL LNPVFNNNPI GLQILGICSA LAVTSNLQTA LVMSAALTLV CGFSNLFISM
IRSQIPGSIR MIVQMVIIAS LVIVVDQVLK AYAFSLSKQL SVFVGLIITN CIVMGRAEAF
AMQNPPVLSF FDGIGNGLGY SAMLVALGVI RELFGAGKLM GYEIFSVVND GGWYQPNGML
LLPPSAFFLI GLFIWGIRSW KKDQIEKNVY KMAPQVSSKE AY
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