| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1563 |
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| Symbol | |
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| ID | 5109221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1722308 |
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| End bp | 1722952 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640502791 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001187059 |
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| Protein GI | 146306594 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.241819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTGCC GGGTATTGCT GGCCGACGAT CACGCGGTGA TTCGCGCCGG CGTACGCGCG
ATGATCCAGG ACATCGACGA CTACACCATC GTCGGCGAGG CCGAGGACGG CAAGGAAACC
GTGGAGCTGG CCCGCGAGCT GGAGCCGGAC ATCATCCTGC TGGACATCTC CATGAAGCGG
GTCAGCGGCC TGGAAGCCCT GCAGGTACTG AACCGTCACT CGCCGGACTG CAAGGTGCTG
ATCCTGTCCA TGCACACCGG CCCGGAAGTG GTACTCGAAG CCCTGCAAAA AGGTGCCCAC
GGCTACCTGC TCAAGGACGC CGCCGCCTTC GAGCTGCGCC TGGCGCTTGA AGCGGTACGC
CGCGGCGACC GTTATCTGAG CTCGGCCATC GTGCAACCGG TGATCGAGCA GGCCGTCTCC
AAGGTCAATG CCCATGCCGA GCATGGGCTG ACTCAACGCC AGCTGGAAAT CCTGCGCCTG
ATCACCCGCG GCGAATCGAC CCGTTCCATC GCCAATGGCC TGGGTCTGAG CGTGAAGACC
GTGGAGGCGC ACCGCGCGCA GATCATGAAG CGCCTGCAGA TCCATGACGT GCCGAGCCTG
GTGCTCTACG CCGTGCGCGA AGGCATCATC AGCCCGGACG ACTGA
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| Protein sequence | MTCRVLLADD HAVIRAGVRA MIQDIDDYTI VGEAEDGKET VELARELEPD IILLDISMKR
VSGLEALQVL NRHSPDCKVL ILSMHTGPEV VLEALQKGAH GYLLKDAAAF ELRLALEAVR
RGDRYLSSAI VQPVIEQAVS KVNAHAEHGL TQRQLEILRL ITRGESTRSI ANGLGLSVKT
VEAHRAQIMK RLQIHDVPSL VLYAVREGII SPDD
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