| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1546 |
|---|
| Symbol | |
|---|
| ID | 5108496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1706598 |
|---|
| End bp | 1707200 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640502774 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001187042 |
|---|
| Protein GI | 146306577 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.818865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.434033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATT CCGATCTCTT GGGGCGCCTG CTCGCCGGCG AGCAGAAGGC CTACCGCGAG
CTGGTGGCTC GCTATCAGGG TGCGATGCGG GCGGTGGCCT ATGCCATCGT CGGCAGCCGC
CATGCCGATG AGGTGGTGCA GGATGCCTGG TTCGCCGTGG TGCGCAACCT GGCAGGTTTT
CAAGGCCGCG CCAGCCTCAA GACCTGGCTG CTGACCATCA CCGCCAACAC CGCCAAGACC
CGACTCAAGC ACAACCGCCG CGAGGTGCTG CTCGACGACC TGCCGGCACC CCATGGCACG
GTCGGCGACC AGCGTTTCGC CGATGACGGC CACTGGCTGC TGGCGCCGCA TGCCTGGCAT
CAGGACAGCC CCGAAGCGCT GCTTACCGAG GACGAATTGC GCCAGTGCCT GGAACACACA
CTGGCCAGCC TGTCCGAACT GCAGGCCAGC GTGCTGGTGC TGCGCGAGCG CCAGGGCCTG
GAGTTGGAGG CGATCTGTAA TCTTCTCGAC ATCTCGCTCT CCAATGCACG TGTGCTGTTG
CACCGGGCAC GCCTGAAAGT CTTCGCCACC CTGGAACATT TCGAGGAGAC AGGCCAATGC
TGA
|
|---|
| Protein sequence | MSDSDLLGRL LAGEQKAYRE LVARYQGAMR AVAYAIVGSR HADEVVQDAW FAVVRNLAGF
QGRASLKTWL LTITANTAKT RLKHNRREVL LDDLPAPHGT VGDQRFADDG HWLLAPHAWH
QDSPEALLTE DELRQCLEHT LASLSELQAS VLVLRERQGL ELEAICNLLD ISLSNARVLL
HRARLKVFAT LEHFEETGQC
|
|---|
| |