| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1511 |
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| Symbol | |
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| ID | 5108462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1670120 |
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| End bp | 1674136 |
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| Gene Length | 4017 bp |
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| Protein Length | 1338 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502740 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001187008 |
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| Protein GI | 146306543 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.282156 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.513944 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGACC TCGCCACGCT GCAGAAGAAC CTCGACCACG TCATGATCGC CGAGCGCCAT
CGTTTGCGCC GGCAGTTGCA TGAGCTGCAG AAGCAGCCCG ATGAGGCGAA GCTGGCGCAG
TGGCTGGAGC GTTTTCAGGC GTCCAGCGAC AAGGTGACGG CGCGGCGTAG CAGCATCCCC
ACGATGCGCT ACGACGATGC GCTGCCGATT GCCGCCAAGC GCGACGAGAT CAAGGCCGCA
CTGGAGAAGA GCCAGGTGGT GGTGATCGCC GGCGAGACCG GTTCGGGCAA GACCACGCAG
TTGCCGAAGA TCTGTCTGGA GATCGGCCGG GGTGTGCATG GGCTGATCGG CCATACCCAG
CCGCGTCGGC TGGCGGCGCG CAGTGTGGCG ACTCGGGTGG CCGAGGAAAT CGGTACGCCG
CTGGGCGAGC TGGTCGGCTA TCAGGTGCGT TTCGAGGATC AGAGCAAGGA CGGCACGCTG
ATCAAGCTGA TGACCGACGG CATCCTGCTC GCCGAAACCC AGCACGACCG CTTTCTGGAA
AAGTACGACA CCATCATCGT CGACGAGGCG CACGAACGCA GCCTCAACAT CGACTTCCTG
CTCGGCTACC TGAAGACCCT GCTGCCGCGC CGCCCGGATC TGAAGCTGAT CATCACCTCG
GCGACCATCG ATCTGGAACG CTTTTCCAAG CACTTCAACG ACGCGCCGAT CATCGAGGTG
TCCGGTCGCA CCTACCCGGT GGAAACCTGG TATCGCCCGC TGGCGGCCGA GGTGGACGAG
GAGGGCGAGC GTCTGCTCGA TGACCTGTCC ATCGACCAGG GCATTCTCGC CGCGCTGGAC
GAGATCGCCG AGCACGAGCG CAGCGTGGGC AAGCGCCCCG GCGACGTGCT GGTGTTCCTG
CCCGGTGAGC GCGAGATTCG CGAGTCCGCC GAGGTGCTGC GCAAGGCCAA TCTGCGCCAT
ACCGAGGTGC TGCCGCTGTA TGCGCGGTTG ACGCCGGCCG AGCAGCAGAA GATTTTCGCG
CCCATGCCGG GGCGCAAGAT CGTGCTGGCC ACCAACGTTG CGGAAACCTC GCTGACCGTG
CCGGGCATTC GCTACGTGAT CGACAGCGGC ACCGCGCGCA TCAGCCGCTA CAGCTACCGT
GCCAAGGTGC AGCGCTTACC CATCGAGCCG GTGTCGCAGG CCAGCGCCAA CCAGCGCAAG
GGCCGATGCG GGCGGGTCGA GCCGGGCATC TGCATTCGTT TGTACAGCGA GGAGGATTTT
CTCGGTCGCC CTGAGTTCAC CGATCCGGAG ATTCTGCGTA CCAATCTCGC GGCGGTGATC
CTGCAGATGC TGCATCTGCG CCTGGGCAGC ATCGAGGACT TCCCCTTTAT CGAGCCGCCA
GATGGCAAGG CCATCAGCGA CGGCTTCAAC CTGTTGCAGG AGCTGTCGGC GGTCAACCGC
GAAAGCCAGC TTACGCCCAT CGGCCGGCAA CTGGCGCGCC TGCCCATCGA CCCGCGCCTG
GGACGCATGG TGCTGGAAGG CGCCAAGCAG GGCAGCCTGG AGGAAATCCT TATCGTCGCT
GCCGCGCTGT CGGTGCAGGA CCCGCGCGAG CGACCGATGG ATCGCCAGCA GGCCGCCGAC
CAGGCGCATG CGCAGTGGAA GGATGTGGAC TCGGACTTCG CCGCGCTGAT CAACCTGTGG
CGCGGCTTCG AGGAAAAGCG CCAGGAGCTG GGCAGCAACC CGCTGCGTAC CTGGTGCAAG
AAGAACTTCC TCAACTACAT GCGCCTGCGC GAATGGCGCG ACGCGCACCG ACAACTGGTG
CTGATCGCTC GTGATCTGCA GCTGCTGGGC AAGGGCGGCC AGAACCGCTC GGAGGCGAAG
GGCGAGCAGA CGGCGAATAC GCCGCAGCCG ACCAAGGACA CCCGCGTCAA CGCCATCGCC
CGCCAGCAGG CCGAGGCCAG CGAGGCGGCG GTGCGGGCGA AGAACTACGC CGCCGTGCAC
AAGGCGATTC TCGCCGGCCT GCTCAGCCAG ATCGGCCAGA AGACCGAGGA GGGCGACTAC
CTCGGTGCGC GCCAGCGACG TTTCTGGATT CACCCGTCGA GCGTGATCGG GCGCAAGAAA
CCCAACTGGG TGATGGCCGC CGAGCTGGTG GAAACCACCA AGCTGTTCGC CCGTATGGTG
GCGAAGATCG AGCCGGACTG GATCGAGCCG CTGGCGGCGC ACCTGGTGAA GAAGAACCAT
ATGGAGCCGC ACTGGGAGAA GAAGCGCGGC CAGGTGGTGG CCTACGAGCA GGTCACCCTG
TACGGCATGA TCATCGTCGG CCGTCGGCCG GTGCATTACG GCCCCATCGA CCCGCCGGTT
TCTCGTGAGA TGTTCATTCG CGAGGGCCTG GTGCGTGGCG AGATCAACAG CCGCGTGCGC
TGCCTGACCG CCAACCGCCA GTTGCTCGAA CGCTTGGACG AGCTGGAGGC CAAGTCGCGC
CGTCGCGATA TCCTCGCGGA TGAAGAGACG TTATTCGGCT ACTACGACGC GCGCATCCCG
CAGGACATCT ACCAGGCCGC GAGTTTCGAG AGCTGGTACA AGAAAGGCAG CGCCGCCGAT
CCGCAGCTGC TGATCATGCG CGAGGAAGAC GCCCTGGCCC GCGATGCCAG GGAGGTCACC
GCCGCGCAGT ACCCGGACAC CCTGCGCATC GGCGAGCTGC AATTGCCGCT GAGCTATCAC
TTCGAGCCCA ATCACCCGCG TGACGGCGTG ACCCTGCGCG TGCCGGCACC GCTGTTGCCG
CAACTGCAGC CCGAACTCCT GGAATGGCTG GTGCCGGGGC TGCTGGAGGC CAAGTGCATC
GCGCTGGTAC GTGGCCTGCC CAAGGCGCTG CGCAAGAACT TCGTGCCGGT GCCGGACTTC
GTCGGCGCGG CGCTGGACAA GCTGGTATTC GGCCAGGGTT CGTTGCCGCA GGCCCTTGGT
GCCGAGCTGC TGCGCATGAC CGGCGCTCGG GTGTCCGACG AGGCCTGGGC GGAAGCGGCT
GAAAGCATAG AAAACCACCT GAAGATGAAT ATCGAGGTGG TGGATGCGCG CGGCAAGTTC
CTTGGCGAAG GTCGCGATCT GGCCGAGCTG ACCGCGCGTT TCGCCGAGGC CAGCCAGGCT
GCCTTGGCCA TCCCGCAGCA GAGCGACAAG CCGAAAGCGG TGGAGGCCAA GGCCTTTGCC
GAAGTGGCCG AGAAGGCGCA GCAGAAGATT GCCGGGCTTT CCATGACCGT CTACCCGGCG
CTGGTGGAAG AGGGCGGGGT GGTCAAGGAA GGGCGCTTCC CGACCCAGGC CGAGGCCGAC
TTCCAGCATC GTCGTGCGCT GCAGCGTTTG CTGTTGCAGC AACTGGCCGA GCAGGCGAAG
TTTCTGCGCG GCAAGCTGCC GGGGCTGACC GAGCTGGGCT TGCTGTACCG CGATATTGGC
CGCGTCGAGG CGCTGGTCGA GGACATTCTG CTGGCCAGCC TGGATGCCTG CATCCTCGAA
GGCGAAGCGA CGCTACCGCG TGATGGCGCG GCCCTGGCGC AGCTGGCCGA GCGCAAGCGC
GGCGACTGGA CGGCGCATGC CGAACGTATC GCCCGCCAAG TGCTGGAGAT TCTCAAGCTG
CACCATGACC TGCAGAAGCG CTTCAAGGGC AAGATCGACC TGGCCCAGGC CATGGCGCTC
AACGACATCA AGCAGCAGCT GGCCAATCTG GTGTACGCCG GCTTCGTGCG CGAGACGCCG
GGCGAGTGGC TCAAGGAGAT TCCGCGTTAC CTCAAGGCCA TCGAGCAGCG CCTGGACAAG
GTCGGCGCGC AGGTGCAGCG CGACCGCGTC TGGACCGGCG AGCTGACCGG CTATTGGGAG
CAGTACCAGG CGCGCACGGC CAAGCATGCC CAGGAGGGCA AGCGCGACCC GCAGCTGACC
CTGTACCGTT GGATGCTGGA GGAGTACCGC GTGTCGCTGT TCGCCCAGCA ACTGGGGACG
AAGATGGCGG TATCGGACAA GCGCCTCGCC AAGCAGTGGA GCCTGGTGGA GGCCTGA
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| Protein sequence | MTDLATLQKN LDHVMIAERH RLRRQLHELQ KQPDEAKLAQ WLERFQASSD KVTARRSSIP
TMRYDDALPI AAKRDEIKAA LEKSQVVVIA GETGSGKTTQ LPKICLEIGR GVHGLIGHTQ
PRRLAARSVA TRVAEEIGTP LGELVGYQVR FEDQSKDGTL IKLMTDGILL AETQHDRFLE
KYDTIIVDEA HERSLNIDFL LGYLKTLLPR RPDLKLIITS ATIDLERFSK HFNDAPIIEV
SGRTYPVETW YRPLAAEVDE EGERLLDDLS IDQGILAALD EIAEHERSVG KRPGDVLVFL
PGEREIRESA EVLRKANLRH TEVLPLYARL TPAEQQKIFA PMPGRKIVLA TNVAETSLTV
PGIRYVIDSG TARISRYSYR AKVQRLPIEP VSQASANQRK GRCGRVEPGI CIRLYSEEDF
LGRPEFTDPE ILRTNLAAVI LQMLHLRLGS IEDFPFIEPP DGKAISDGFN LLQELSAVNR
ESQLTPIGRQ LARLPIDPRL GRMVLEGAKQ GSLEEILIVA AALSVQDPRE RPMDRQQAAD
QAHAQWKDVD SDFAALINLW RGFEEKRQEL GSNPLRTWCK KNFLNYMRLR EWRDAHRQLV
LIARDLQLLG KGGQNRSEAK GEQTANTPQP TKDTRVNAIA RQQAEASEAA VRAKNYAAVH
KAILAGLLSQ IGQKTEEGDY LGARQRRFWI HPSSVIGRKK PNWVMAAELV ETTKLFARMV
AKIEPDWIEP LAAHLVKKNH MEPHWEKKRG QVVAYEQVTL YGMIIVGRRP VHYGPIDPPV
SREMFIREGL VRGEINSRVR CLTANRQLLE RLDELEAKSR RRDILADEET LFGYYDARIP
QDIYQAASFE SWYKKGSAAD PQLLIMREED ALARDAREVT AAQYPDTLRI GELQLPLSYH
FEPNHPRDGV TLRVPAPLLP QLQPELLEWL VPGLLEAKCI ALVRGLPKAL RKNFVPVPDF
VGAALDKLVF GQGSLPQALG AELLRMTGAR VSDEAWAEAA ESIENHLKMN IEVVDARGKF
LGEGRDLAEL TARFAEASQA ALAIPQQSDK PKAVEAKAFA EVAEKAQQKI AGLSMTVYPA
LVEEGGVVKE GRFPTQAEAD FQHRRALQRL LLQQLAEQAK FLRGKLPGLT ELGLLYRDIG
RVEALVEDIL LASLDACILE GEATLPRDGA ALAQLAERKR GDWTAHAERI ARQVLEILKL
HHDLQKRFKG KIDLAQAMAL NDIKQQLANL VYAGFVRETP GEWLKEIPRY LKAIEQRLDK
VGAQVQRDRV WTGELTGYWE QYQARTAKHA QEGKRDPQLT LYRWMLEEYR VSLFAQQLGT
KMAVSDKRLA KQWSLVEA
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