| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1496 |
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| Symbol | |
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| ID | 5108447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1656266 |
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| End bp | 1657954 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640502725 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_001186993 |
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| Protein GI | 146306528 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00382962 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.913508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAA ACTTCTGGAA GGACAAGTAT CCCGTTGGGG TTGCTGCCGA AATCAATCCC
GACCAGTACC CGAACATCCT CGCGGTACTG AAGGAGTCCT GCCAACGCTT CGCCGACAAG
CCTGCTTTCA GCAACCTGGG CAAGACGCTC ACCTACGGCG AGATCTACAA GCTTTCCGGT
GACTTCGCCG CCTACCTGCA GAAGCACACC GATCTCAAGC CCGGCGACCG CATCGCCGTG
CAGCTGCCCA ACGTCCTGCA GTATCCCATT GTGGTGTTCG GTGCCATGCG TGCCGGCCTG
GTGGTGGTCA ACACCAACCC GCTGTACACC GCGCGGGAAA TGGAACACCA GTTCAACGAC
TCCGGCGCCA AGGCGCTGAT CTGCCTGGCC AACATGGCGC ACCTGGCCGA GCAGGTCGTG
CCCAAGACCG GCGTCAAGCA TGTGATCGTC ACGGAAGTGG GTGACATGCT GCCCACCTTC
AAGCGTCTGC TGGTCAATGC CGTGATCAAG CACGTGAAGA AGATGGTGCC GTCCTATCAC
CTGCCGCAGG CGGTCAAGCT CAACGATGCG CTGGCCAAGG GCCGCGGGCA GAGCTTCAAC
GAAGCCAATC CGAGCAACGC CGATATCGCC GTGCTGCAGT ACACCGGCGG CACCACCGGC
GTGGCCAAGG GCGCCATGCT CACCCATCGC AACCTGGTGG CCAACATGCT GCAGGTCAAG
GAGCTGATGG GCGCCAACCT GGACGAAGGC TGCGAAGTGC TGATCGCACC GCTGCCGCTG
TATCACATCT ACGCCTTCAC CTTCCATTGC ATGGCGATGA TGCTGATCGG TGGCCACAAC
ATCCTGCTGA CCAACCCGCG CGATCTGCCG GCCGTGGTCA AGGACCTGGC CAAGTACCGC
TTCACCGGTT TCGTCGGCCT CAACACCCTG TTCGTGGCCC TGTGCAACAA CGAAGAATTC
CGCAAGCTGG ATTTCTCCGC GCTCAAGCTC ACCGTTTCCG GTGGCATGGC CCTGCAACTG
GCTACCGCCG AACGCTGGAA GGAAGTCACC GGCTGCGCCA TCTGCGAAGG CTTCGGCATG
ACCGAAACCA GCCCGGTGGC CACGGTCAAC CCGTTCAGCG CCATCCAGCT CGGCACCATC
GGCATTCCAG TGCCCTCGAC CCTGTGCAAG ATCATCAACG ATGACGGTCA GGAACTGGCC
ATTGGCGAGA TCGGCGAGCT GTGCGTGAAG GGCCCGCAGG TGATGAAGGG CTACTGGCAG
CGTCAGGAAG CCACCGACGA GATCCTCGAC GCTGACGGCT GGCTGAAGAC CGGCGACATC
GGCCTGATTC AGGAAGACGG CTACCTGCGC ATCGTCGACC GCAAGAAGGA CATGATTCTG
GTGTCCGGCT TCAACGTCTA CCCGAACGAG TTGGAAGACG TGCTGGCGAC CCTGCCGGGC
GTGCTGCAAT GCGCCGCCAT CGGCGTACCG GACGAGAAAT CTGGCGAGGC GATCAAGGTG
TTCGTGGTGG TCAAGCCGGG CGAGAGCGTG ACCAAGGAGC AGGTGATGGA GCACATGCGC
GCCAACCTCA CCGGCTACAA GGTGCCTAAG GCTGTCGAGT TCCGCGACGT GCTGCCGACC
ACCAATGTCG GCAAGATCCT GCGTCGCGAA CTGCGCGACG AAGAGCTGAA GAAGCTGGGC
AAGAAGTGA
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| Protein sequence | MTENFWKDKY PVGVAAEINP DQYPNILAVL KESCQRFADK PAFSNLGKTL TYGEIYKLSG
DFAAYLQKHT DLKPGDRIAV QLPNVLQYPI VVFGAMRAGL VVVNTNPLYT AREMEHQFND
SGAKALICLA NMAHLAEQVV PKTGVKHVIV TEVGDMLPTF KRLLVNAVIK HVKKMVPSYH
LPQAVKLNDA LAKGRGQSFN EANPSNADIA VLQYTGGTTG VAKGAMLTHR NLVANMLQVK
ELMGANLDEG CEVLIAPLPL YHIYAFTFHC MAMMLIGGHN ILLTNPRDLP AVVKDLAKYR
FTGFVGLNTL FVALCNNEEF RKLDFSALKL TVSGGMALQL ATAERWKEVT GCAICEGFGM
TETSPVATVN PFSAIQLGTI GIPVPSTLCK IINDDGQELA IGEIGELCVK GPQVMKGYWQ
RQEATDEILD ADGWLKTGDI GLIQEDGYLR IVDRKKDMIL VSGFNVYPNE LEDVLATLPG
VLQCAAIGVP DEKSGEAIKV FVVVKPGESV TKEQVMEHMR ANLTGYKVPK AVEFRDVLPT
TNVGKILRRE LRDEELKKLG KK
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