Gene Pmen_1493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1493 
Symbol 
ID5108444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1652379 
End bp1652849 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content65% 
IMG OID640502722 
Productdehydratase 
Protein accessionYP_001186990 
Protein GI146306525 
COG category[I] Lipid transport and metabolism 
COG ID[COG2030] Acyl dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0447243 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCAGG TCACCAACAT CCCCTACGAC GCCCTCAGCA TCGGCCAGCA GGCCAGTTTC 
GAGAAGCATG TGCAGGAGCG CGACGTGCAA CTGTTCGCCG CCGTCTCGGG CGACAATAAC
CCGGTGCACC TGGACGCCGA CTTCGCCGCC GAGACGATGT TCAAGGAGCG CATCGCCCAC
GGCATGTTCA CCGGCGCGCT GATCAGCGCG GCCATCGCCT GCCGCCTGCC GGGCCCCGGC
ACCATCTACC TCGGCCAGCA GCTCAAGTTC ACCCGCCCGG TGAAACTCGG CGATACCCTG
ACCGTGCAGC TGGAAGTACT GGAAAAACTG CCGAAGAATC GCGTGCGCAT CGCCACCCGC
GTGTTCAACC AGGACAACAA GCAGGTGGTC GACGGCGAAG CCGAAGTCCT CGCCCCGGCG
AGCGAACAGA CAGTGACCAT GCCGGCCATG CCGCAGGTGA CTGTCGGCTG A
 
Protein sequence
MTQVTNIPYD ALSIGQQASF EKHVQERDVQ LFAAVSGDNN PVHLDADFAA ETMFKERIAH 
GMFTGALISA AIACRLPGPG TIYLGQQLKF TRPVKLGDTL TVQLEVLEKL PKNRVRIATR
VFNQDNKQVV DGEAEVLAPA SEQTVTMPAM PQVTVG