Gene Pmen_1458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1458 
Symbol 
ID5109747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1619901 
End bp1621166 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content66% 
IMG OID640502687 
Productouter membrane porin 
Protein accessionYP_001186955 
Protein GI146306490 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGCAG CCTCACGCCA GGCTTTGCCG CCTGTACGCC TGCTCTGCCT GGCTATCGCC 
GCCACCGGCG CAGCCCCTCT CGCCAACGCC GCCTTCATCG AAGACAGCAC GGCCAGCCTC
ACCGCCACCA ACATCTACCT GAACCGCGAT TTTCGTGAAG GCACCGGCCA GAACAAGCGC
GAAGAATGGG GCCAGGGCTT TCGCCTCGAC CTGCAATCGG GCTACACCGA AGGCACCGTC
GGTTTCGGCC TCGACGCCAT GGGCCTGCTC GGTATCAAGC TCGACTCGGG CCGCGGCCGC
ACCGGTACCG ATCTGCTGCC GGTACACGAC GATGGCCGCT CCGCCGACGA ATTCAGCCGC
CTGGGCCTGA CCGCCAAGGT CAAGGTCTCC GCCACCGAGC TGCGCTACGG CTCGCACGTG
CCCGAGCTGC CGGTGGTCAA GGCCAGCGAC AGCCGCCTGC TGCCGCAGGT GTTCGAAGGC
GGCCTGCTGA CTTCCTCGGA AGTCGACGGC CTGACCTTCA CCGGCGGCCG CCTGGACAAG
GTCATCGACC GCGCCTCCAC CGATGACGAA GACCTGGTGC TCAACGCCAA GAACCGCCGC
TTCACCAGCG GCGTCAGCGC CGACCACCTG GACCTGGCCG GCCTCGACTA CCAGTTCGCC
CCCGGCTTCA CCGGCCGCTA CTACTTCGCC GATCTGGACG ACATCTACCG CCAGCACTTC
TTCGGCCTGC TCAGCAGCCA CAAGCTCGGC GCCGGCACCC TGAGCAGCGA CCTGCGTTAC
ATCGTCAGCC GCGACAGTGG TGCGGCCAAC GCCGGCAAGG TCGACAACCG CGCCGTCAAT
GCCATGCTCA GCTACGGCAT CGGCGCACAC AAGTTCGGCC TGGGCTTCCA GGACATGAGC
GGCGATACCG GCTTCGCCTA CATCGACGGC AGCGATCCGT TCCTGATCAA CTTCGTGCAG
ATCAACGACT TCGCCAATGC CGACGAGCGC TCCTGGCAGG CGCGTTACGA CTTCAATTTC
GCCAGCCTCG GCGTCCCCGG CCTGACCTTC ATGACCCGCT ACATCCGCGG CGACGATGCC
CGCATCGCCG GCAGCGACGA GCGTGGCGGC GAATGGGAAC GCGATATCGA ACTCAAGTAC
GTGGTGCAGA CCGGCCCGCT CAAGGACCTC TACGTGCGCC TGCGCAACGC CAGCTTCCGC
TCCGACTTCG CCCGCGATGC GGACGAGAAC CGTGTCATCG TCGGCTACAG CCTGCCGATC
TGGTAA
 
Protein sequence
MLAASRQALP PVRLLCLAIA ATGAAPLANA AFIEDSTASL TATNIYLNRD FREGTGQNKR 
EEWGQGFRLD LQSGYTEGTV GFGLDAMGLL GIKLDSGRGR TGTDLLPVHD DGRSADEFSR
LGLTAKVKVS ATELRYGSHV PELPVVKASD SRLLPQVFEG GLLTSSEVDG LTFTGGRLDK
VIDRASTDDE DLVLNAKNRR FTSGVSADHL DLAGLDYQFA PGFTGRYYFA DLDDIYRQHF
FGLLSSHKLG AGTLSSDLRY IVSRDSGAAN AGKVDNRAVN AMLSYGIGAH KFGLGFQDMS
GDTGFAYIDG SDPFLINFVQ INDFANADER SWQARYDFNF ASLGVPGLTF MTRYIRGDDA
RIAGSDERGG EWERDIELKY VVQTGPLKDL YVRLRNASFR SDFARDADEN RVIVGYSLPI
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