Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1458 |
Symbol | |
ID | 5109747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1619901 |
End bp | 1621166 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640502687 |
Product | outer membrane porin |
Protein accession | YP_001186955 |
Protein GI | 146306490 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGCAG CCTCACGCCA GGCTTTGCCG CCTGTACGCC TGCTCTGCCT GGCTATCGCC GCCACCGGCG CAGCCCCTCT CGCCAACGCC GCCTTCATCG AAGACAGCAC GGCCAGCCTC ACCGCCACCA ACATCTACCT GAACCGCGAT TTTCGTGAAG GCACCGGCCA GAACAAGCGC GAAGAATGGG GCCAGGGCTT TCGCCTCGAC CTGCAATCGG GCTACACCGA AGGCACCGTC GGTTTCGGCC TCGACGCCAT GGGCCTGCTC GGTATCAAGC TCGACTCGGG CCGCGGCCGC ACCGGTACCG ATCTGCTGCC GGTACACGAC GATGGCCGCT CCGCCGACGA ATTCAGCCGC CTGGGCCTGA CCGCCAAGGT CAAGGTCTCC GCCACCGAGC TGCGCTACGG CTCGCACGTG CCCGAGCTGC CGGTGGTCAA GGCCAGCGAC AGCCGCCTGC TGCCGCAGGT GTTCGAAGGC GGCCTGCTGA CTTCCTCGGA AGTCGACGGC CTGACCTTCA CCGGCGGCCG CCTGGACAAG GTCATCGACC GCGCCTCCAC CGATGACGAA GACCTGGTGC TCAACGCCAA GAACCGCCGC TTCACCAGCG GCGTCAGCGC CGACCACCTG GACCTGGCCG GCCTCGACTA CCAGTTCGCC CCCGGCTTCA CCGGCCGCTA CTACTTCGCC GATCTGGACG ACATCTACCG CCAGCACTTC TTCGGCCTGC TCAGCAGCCA CAAGCTCGGC GCCGGCACCC TGAGCAGCGA CCTGCGTTAC ATCGTCAGCC GCGACAGTGG TGCGGCCAAC GCCGGCAAGG TCGACAACCG CGCCGTCAAT GCCATGCTCA GCTACGGCAT CGGCGCACAC AAGTTCGGCC TGGGCTTCCA GGACATGAGC GGCGATACCG GCTTCGCCTA CATCGACGGC AGCGATCCGT TCCTGATCAA CTTCGTGCAG ATCAACGACT TCGCCAATGC CGACGAGCGC TCCTGGCAGG CGCGTTACGA CTTCAATTTC GCCAGCCTCG GCGTCCCCGG CCTGACCTTC ATGACCCGCT ACATCCGCGG CGACGATGCC CGCATCGCCG GCAGCGACGA GCGTGGCGGC GAATGGGAAC GCGATATCGA ACTCAAGTAC GTGGTGCAGA CCGGCCCGCT CAAGGACCTC TACGTGCGCC TGCGCAACGC CAGCTTCCGC TCCGACTTCG CCCGCGATGC GGACGAGAAC CGTGTCATCG TCGGCTACAG CCTGCCGATC TGGTAA
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Protein sequence | MLAASRQALP PVRLLCLAIA ATGAAPLANA AFIEDSTASL TATNIYLNRD FREGTGQNKR EEWGQGFRLD LQSGYTEGTV GFGLDAMGLL GIKLDSGRGR TGTDLLPVHD DGRSADEFSR LGLTAKVKVS ATELRYGSHV PELPVVKASD SRLLPQVFEG GLLTSSEVDG LTFTGGRLDK VIDRASTDDE DLVLNAKNRR FTSGVSADHL DLAGLDYQFA PGFTGRYYFA DLDDIYRQHF FGLLSSHKLG AGTLSSDLRY IVSRDSGAAN AGKVDNRAVN AMLSYGIGAH KFGLGFQDMS GDTGFAYIDG SDPFLINFVQ INDFANADER SWQARYDFNF ASLGVPGLTF MTRYIRGDDA RIAGSDERGG EWERDIELKY VVQTGPLKDL YVRLRNASFR SDFARDADEN RVIVGYSLPI W
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