Gene Pmen_1437 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1437 
Symbol 
ID5109726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1598629 
End bp1599744 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content69% 
IMG OID640502666 
ProductCdaR family transcriptional regulator 
Protein accessionYP_001186934 
Protein GI146306469 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3835] Sugar diacid utilization regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGAAC TCGACTCCAC CCTGGCCCAG CACATCGTCG ATCGTGCCAT GGCCATCCTG 
CCGCACAACA TCAACGTCAT GGACGCCCAG GGAATGATCA TCGGCAGCGG TGATCCCAGC
CGTCTGCATA CCCGTCACGA GGGGGCGCAA CTGGTGCTGG CCAACCGCCG CGTGGTGGAG
ATCGACGCCC AGGCCGCAGC CTGCCTGCGT GGCGTGAAGC CCGGGGTCAA TCTGCCGCTG
CTGCATGCCG AGCAACTGAT CGGCGTGCTG GGGATCACCG GCGATCCGGA CATCGTCAGG
CCTTACGCCG AGCTGGTACG CATGGCTGCC GAAATGCTGG TCGAGCACCG CGTGCTGCAG
GCCGAGCGGC ACTGGCAGCG GCATCAGCAG GAGGCCTGGC TGCGCCAGCT GCTGGATCCG
CAGCAGCGGC TCAGCAGCCT GGAAGTCGAG GCCGAACGCC TGGGGCTGCA GCTCACCTGG
CCGCGGCAGA TATGCCTGCT GCGTCTGGTG GAGGAGGGCG ATCCGCTGCC GCGCCAGGCA
CGTCTGCTCG CCGCGCTGGG TAGCAAGAGC GAGCATCTGC TGGCGCCGCT CGGGCGCCAC
GAGCTCTTGT GGTGCAGGCC GTACAGCGCC GGTCGCGATG ACCATGCCTG GTTGGCGCAG
GCCGATGAGC GTGAGTGGGG CATACGCTCG CTGGCGCTCA GCGACCCGCT GCACGACCTG
GCCGAGCTGC GTCAGGCCAG CCTGGTGCTG CGCGACCTGC AGGCCTATGG CCTGGCGCGT
TTTCCGGAGC GTCGCCTGTT GCCCCTGGAA GAGCTGCGTC TGCCGACCTT GCTCCATGCT
CAGCGCCACA GCTGGTTGCT GCAGGGCTGG CTGGCGCCGC TGCGCCGGGT GTTGGCGCAG
GACCCGCACG GCACCCTGCG CGCCACGCTG GAGGCCTGGT GCGCGCATGA CGGCCAGGTG
CAGCTGTGCG CGCAGGCGCT GGGCATCCAC CGCAACACCC TGCGTTATCG TCTGGAGCGT
ATCGGCGAGC TCAGCGGACT GGACCTCGAT CGCCTGGATC AGCGCCTGCA ACTGTCGCTC
GGGTTGGGCC TGCTGGAGTC GGGCGAGGCC GATTGA
 
Protein sequence
MLELDSTLAQ HIVDRAMAIL PHNINVMDAQ GMIIGSGDPS RLHTRHEGAQ LVLANRRVVE 
IDAQAAACLR GVKPGVNLPL LHAEQLIGVL GITGDPDIVR PYAELVRMAA EMLVEHRVLQ
AERHWQRHQQ EAWLRQLLDP QQRLSSLEVE AERLGLQLTW PRQICLLRLV EEGDPLPRQA
RLLAALGSKS EHLLAPLGRH ELLWCRPYSA GRDDHAWLAQ ADEREWGIRS LALSDPLHDL
AELRQASLVL RDLQAYGLAR FPERRLLPLE ELRLPTLLHA QRHSWLLQGW LAPLRRVLAQ
DPHGTLRATL EAWCAHDGQV QLCAQALGIH RNTLRYRLER IGELSGLDLD RLDQRLQLSL
GLGLLESGEA D