| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1402 |
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| Symbol | |
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| ID | 5109691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1564240 |
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| End bp | 1567074 |
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| Gene Length | 2835 bp |
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| Protein Length | 944 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502631 |
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| Product | electron transport complex protein RnfC |
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| Protein accession | YP_001186899 |
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| Protein GI | 146306434 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
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| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.860812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGC AGGAAAAGAT CTGGGATATA CCCGGCGGCA TCCACCCTGC CGAGCGCAAG
GAACTGTCCA ACCGCACACC GATCCAGCAG GCGCCGCTGC CCAAGCGCCT GGTGTTGCCG
CTCGGCCAGC ATATCGGTGC AGTCGCCGAG CCCTGCGTGG TGGTCGGCCA ACGGGTGCGC
AAGGGCGAGA AGATCGCCGA GGCCAACGGT TTCGTCAGCG CCCCGCTGCA TGCCCCGACC
TCCGGTACCG TCAGCTTTAT CGGCCCGCAG CCCTATCCAC ACGTCTCCGG CATGCTGGCG
CCGGCCATCG TCATCGACAG CGACGGCCTG GACGAGTGGA TCGAACTGAA GCCGCATGCC
GACTACCGGC ATATGGAACC TGCCGAGTTG CTGGCGCTGA TCCGCGAGGC CGGTATCAGC
GGCCTGGGCG GCGCCGGCTT CCCCACCGCG GTGAAGCTCA CCGCACGGCC GACGCAGAAG
ATCCACACGC TGATCATCAA CGGCACCGAG TGCGAGCCCT ATATCACCGC CGACGACCTG
CTGATGCGCG AGCGCGCCGG CGAGCTGGTT TCCGGCATCG ATATCCTGGT GCAGCTGATC
CAGCCCGATC ATGTGCTGAT CGGCATCGAG GACAACAAGC CCGAGGCCAT CGCCGCGGTG
CGCGGCGCCT GCAGCGAGCG CAGCTACCAG GTGCGGGTGT TCCCCACCAA GTACCCCTCC
GGCGGCGAGA AGCAGCTGAT CCAGATTCTC ACCGGTGTCG AGGTGCCCTC GGGCGGGCTG
CCGGCCGATA TCGGCATCCT CTGCCAGAAC GTCGGCACCT GCACGGCCAT TCACGACGCG
GTGGTGCTGG GCAAACCGCT GATTTCGCGT ATCACCACCC TGACCGGCGA GGCGCTGGCG
CGCCCGGGGA ACGTCGAGGC GCTGCTCGGC ACGCCGGTGG GCGAGCTGCT GGAATTCGCA
GAGCTGGACA CCAGCAAACT CAACCGCCTG ATCATGGGCG GACCGATGAT GGGCTTTACC
CTGCCCAGCC TCGAGGTGCC GCTGATCAAG ACCAGCAACT GCCTGCTGGC CAGTACCGCC
GTCGAGCTGC CACCGCCACC ACCGGCCATG CCCTGCATCC GCTGCGGCGA ATGCGCCGAG
GCCTGCCCGG CCAGCCTGCT GCCGCAGCAA CTGCACTTCT TCGCCCTGGG CCAGGAACAC
GAACAGCTCA AGGCGCACAA CCTGTTCGAC TGCATCGAGT GCGGCGCCTG CGCCTACGTC
TGCCCATCGA GCATTCCGCT GGTGCAGTAC TACCGCGCGG CCAAGGCGGA GATCCGCGAG
CTGGAGCAGA AGCAGCTCAA GGCCGAGCAC TCCAAGCAGC GTTTCGAACA GCGCCAGGAA
CGCCTGCGCC GCGCCGAGGA ACAGAAGGAA GCCGAGCGCA AGGCCCGTGC CGAGAAGGCC
GCCCGCGCCA AGGCGGCGCA GGCCGAGGCA CCGGCGGTAG CGGCAGCCGC GCCGGCCGAT
GAGGCGCTGA AGAAACTCAA GATCGAAGCC AGCATGGCCC AGGTCGCGCT GAAGAAGGCG
GAAAAACAGC TGGCCGCCCA CGACACGCCG GAGCTGCAGA CCCAGGTCGC CGAGCTTCGC
GCCGCTGCAG AGGCCGCGCA AAAGGCCCTG GCCGATGCCC AGGCGGCTGC CCCTGCCCCG
GCGTCCAAAC CGGCCGGCGA CGAAGCGCTG AAGAAGGCCA AGATCGAAGC GGCCATGCTC
AAGGCCCAGC TGCGCAAGCT GGAGAAGCTC GAGGCCCCGG ACGACGATCA GCAGACCGAA
ATCGCCCGCC TGCGCCAACA ACTGGAAGCC GCCGAGAAGG CCCTGGCCGA TCTGGAGAGC
CAGGCGCCTG CCCCCGCCGC CAAACCCGCC GGCGACGAAG CGCTGAAGAA GGCCAAGATC
GACGCCGCCA TGCTCAAGGC CCAGCTGCGC AAGCTGGAAA AGATCGAGAA CACGGACGAC
GACCAGCAGG CCGAAATCGC CCGCCTGCGT CAGCAACTGG AAGCAGCCGA GAAAGCCCTG
GCCGATCTGG AGAGCCAGAC GCCCGCCCCC GCCGCCAAAC CGGCCGGCGA CGAAGCGCTG
AAGAAGGCCA AGATCGAAGC CGCCATGCTC AAGGCCCAGC TGCGCAAGCT GGAGAAGCTC
GAAGCCCCGG ACGACGACCA CCAGGCCGAG ATCGCCCGCC TGCGTCAGCA ACTGGAAGAA
GCCGAGAAGA CCCTGGCCAG CCTGGAAACC CAGGCGCCCG CCCCCGCCGC CAAGCCGGCC
GGTGACGAAG CGCTGAAAAA GGCCAAGATC GACGCCGCCA TGCTCAAGGC CCAGCTGCGC
AAGCTGGAAA AGATCGAGAA CCCGGACGAC GACCAGCAGG CCGAACTCGC CCGCCTGCGC
CAGCAGTTGG AAGCCGCCGA GAAAGCCCTG GCCGATCTGG AAAGCCAGGC ACCTGCAGCG
GCAACCAAAC CCGCCGGTGA CGACGCCTTG AAAAAGGCCA AGGTCGAGCT GGCGATGAAA
CGCGCCGAGC TGAAGAAGGC CGAGAAGGCC GGCGCTGAGG AAGCCACGCT GCAGCCGCTG
CGCGAGGCCC TGGCCGCCGC CGAGCAGGCC CTGCATGCCG CCGAAGCCGC CTCGGGCAAA
CCGGCGCCGG AGCTGGTACG CACCGAACGC CCCGGCGTGG ACGAAAAATT CAAGGCGCTG
AAGACCGAGG CGGCCTTCGC CCGCGCCGAC CTGCGCAAGC TGGAGCGTGA CGAGAGCGCC
GCTGGCGAGG CGCTGGAACA GGCACGCACA CGCCTGGCCG AAGCCGAACG CAAGCTGGCC
GAATACCAGC CGTAA
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| Protein sequence | MSAQEKIWDI PGGIHPAERK ELSNRTPIQQ APLPKRLVLP LGQHIGAVAE PCVVVGQRVR
KGEKIAEANG FVSAPLHAPT SGTVSFIGPQ PYPHVSGMLA PAIVIDSDGL DEWIELKPHA
DYRHMEPAEL LALIREAGIS GLGGAGFPTA VKLTARPTQK IHTLIINGTE CEPYITADDL
LMRERAGELV SGIDILVQLI QPDHVLIGIE DNKPEAIAAV RGACSERSYQ VRVFPTKYPS
GGEKQLIQIL TGVEVPSGGL PADIGILCQN VGTCTAIHDA VVLGKPLISR ITTLTGEALA
RPGNVEALLG TPVGELLEFA ELDTSKLNRL IMGGPMMGFT LPSLEVPLIK TSNCLLASTA
VELPPPPPAM PCIRCGECAE ACPASLLPQQ LHFFALGQEH EQLKAHNLFD CIECGACAYV
CPSSIPLVQY YRAAKAEIRE LEQKQLKAEH SKQRFEQRQE RLRRAEEQKE AERKARAEKA
ARAKAAQAEA PAVAAAAPAD EALKKLKIEA SMAQVALKKA EKQLAAHDTP ELQTQVAELR
AAAEAAQKAL ADAQAAAPAP ASKPAGDEAL KKAKIEAAML KAQLRKLEKL EAPDDDQQTE
IARLRQQLEA AEKALADLES QAPAPAAKPA GDEALKKAKI DAAMLKAQLR KLEKIENTDD
DQQAEIARLR QQLEAAEKAL ADLESQTPAP AAKPAGDEAL KKAKIEAAML KAQLRKLEKL
EAPDDDHQAE IARLRQQLEE AEKTLASLET QAPAPAAKPA GDEALKKAKI DAAMLKAQLR
KLEKIENPDD DQQAELARLR QQLEAAEKAL ADLESQAPAA ATKPAGDDAL KKAKVELAMK
RAELKKAEKA GAEEATLQPL REALAAAEQA LHAAEAASGK PAPELVRTER PGVDEKFKAL
KTEAAFARAD LRKLERDESA AGEALEQART RLAEAERKLA EYQP
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