Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1357 |
Symbol | |
ID | 5109410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1517685 |
End bp | 1519211 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640502586 |
Product | diguanylate cyclase |
Protein accession | YP_001186854 |
Protein GI | 146306389 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.255633 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCGTC GGCGACGGCA CGCTAGCATT GGGCCACGCA ATCAAGGCTC GGACCTCATG CCACTCAGCA CTTCCCGCAA GGCCCAGTTC ACCCTTCTGC TACTGCTGGG CACCCTGCTG CTGGGAGGCT TTCTCGCCAC CAGCCTGGCC AGTTACCACG CCTCGCGCGA AAGCATTCGC CACAACATCG TCAACACCGA GCTGCCGCTG ACCTCGGACA ACATCTACTC CGAGATCCAG AAAGACCTGA TCCGCCCGAC GCAGATCGCC TCGATGATGT CGCGCGACAC CTTCCTGCGC GACTGGGCGC TGGCCGGCGA GCTCGATCCC GAGCCCATCA CCCGCTACCT GCGCGAGATC CAGGACCACT ACGGCACCTT CACCAGCTTC TTCATCTCCG AACGCACCCG CACCTACTAC CAGGCCAAGG GCGTGCTCAA GCAGGTCCGC GAGGACGAGC CGCGCGACGC CTGGTACTTC CGCGTGCGTC AGATGAGCGA GCCTTACGAG ATCAGCGTCG ACCCGGACAT GGCCAATGCG GATCGGCTGA CCTTCTTCAT CAACTTCAAG GTGTTCGACT ATGAGGAACG CTTTATCGGC GTGGCCGGCG TCGGCCTCAC CGTGGATGCC GTGGTCAAGC TGGTGGACGA CTACCAGCGG CGCTACGACC GCAGCATCTT CTTCACCGAC CGCAGCGGCC TGCTGGTACT GACCGGCGCC GATGGCGGCC CCATGGGCTC TCGCCGTGGC CAGGCGCTCA ACACCATCGA CGGCCTGGAG AACCTGCTGT TCGAACTGCC GCGCCCCGAA AGTGGCAACT TCAGCTATCA GGAGCACGGC CGCGGCCATT TCCTCAACGT GCGTTACATC CCCGAACTGG ACTGGTACCT GTTCGTCGAT AAGCACGAGG AAGGCGCCCT GGCCGGCATC CGCAAGAGCC TCTACCTCAA CCTGCTGATC TGCACCCTGA TCACCCTGGC CGTGCTGCTT CTGGTCTACC TCGCCACACG CCGCTACCAG CGCCGCATCG CCGCCCTGGC CACCACCGAC AGCCTCACCG AACTGCCCAA CCGCCGCGGC TTCGACATCC TCGCCGCGCA GGCACTGCAG GAGGCGCAGC GAGACAGCAG CCCGCTGTGC GCGGTGCTGC TGGACCTGGA CAACTTCAAG GCCCTTAACG ACGCCCATGG CCATCTGGCC GGCGACGACG TGCTGCGCCG CTTCGCCCGC CAGCTGCGCG GCAGTCTGCG CCAGGCCGAC ATCCTCTGCC GCTGGGGCGG CGAGGAATTC ATCCTGCTGC TGAAGAACAC CGACCGCAAC GCCGCCCATG AGCTGGCCGA GAAACTGCGC CAGCAATGCG CCGAGCAGCG CTACCCGGTT GCAGGCAAGG CCCTGCAGGT CACCGTCAGC CTCGGCCTCA GCCAGTGGCA AGAGGGCGAA ACCCTGCACG ACCTGCTCGG CCGTACCGAT CGCGCGCTGT ATCGCGCCAA GCAGGCCGGG CGCGACCGCG TCTGCGTCGA TCCCTGA
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Protein sequence | MTRRRRHASI GPRNQGSDLM PLSTSRKAQF TLLLLLGTLL LGGFLATSLA SYHASRESIR HNIVNTELPL TSDNIYSEIQ KDLIRPTQIA SMMSRDTFLR DWALAGELDP EPITRYLREI QDHYGTFTSF FISERTRTYY QAKGVLKQVR EDEPRDAWYF RVRQMSEPYE ISVDPDMANA DRLTFFINFK VFDYEERFIG VAGVGLTVDA VVKLVDDYQR RYDRSIFFTD RSGLLVLTGA DGGPMGSRRG QALNTIDGLE NLLFELPRPE SGNFSYQEHG RGHFLNVRYI PELDWYLFVD KHEEGALAGI RKSLYLNLLI CTLITLAVLL LVYLATRRYQ RRIAALATTD SLTELPNRRG FDILAAQALQ EAQRDSSPLC AVLLDLDNFK ALNDAHGHLA GDDVLRRFAR QLRGSLRQAD ILCRWGGEEF ILLLKNTDRN AAHELAEKLR QQCAEQRYPV AGKALQVTVS LGLSQWQEGE TLHDLLGRTD RALYRAKQAG RDRVCVDP
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