Gene Pmen_1294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1294 
Symbol 
ID5109110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1454708 
End bp1455262 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content64% 
IMG OID640502520 
Productpeptidyl-prolyl cis-trans isomerase, cyclophilin type 
Protein accessionYP_001186791 
Protein GI146306326 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.81534 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAAGC AACTCGTTCT CGCCACCGGC GCCCTGCTGC TGTCGTCCAG CCTGCTGGCC 
GCGGAAAATC CCAAGGTGCT GCTGACCACC AGCCTGGGTG AAGTGGAAGT GGAGCTGGCC
GCCGACAAGG CACCGATCAG CACGCAGAAC TTTCTCAAGT ACGTCGACAG CGGCTTCTAC
AACGGCACCC AGTTCCACCG GGTGATTCCC GGCTTCATGG TGCAGGGCGG CGGCTTCGAT
GCCGACATGC GCCAGAAGGA CACCGATGCG CCGATCAAGA ACGAGGCCGA CAACGGCCTG
CACAACGTGC GCGGCACCCT GGCCATGGCA CGTACCCAGG TACGCGACTC GGCCACCAGC
CAGTTCTTCA TCAATCACAA GGACAACGCC TTCCTCGACC ACGGCTCGCG CGACTTCGGC
TACGCCGTGT TCGGCAAGGT GACCCGCGGC ATGGACGTGG TGGACAAGAT CGCCCAGGTG
CCCACCAGCA ACCGCGGCAT GCACCAGAAC GTGCCGCGCG AGCCGGTGCT GATCATCGAG
GCCAAGCGTC TGTAA
 
Protein sequence
MFKQLVLATG ALLLSSSLLA AENPKVLLTT SLGEVEVELA ADKAPISTQN FLKYVDSGFY 
NGTQFHRVIP GFMVQGGGFD ADMRQKDTDA PIKNEADNGL HNVRGTLAMA RTQVRDSATS
QFFINHKDNA FLDHGSRDFG YAVFGKVTRG MDVVDKIAQV PTSNRGMHQN VPREPVLIIE
AKRL