| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1291 |
|---|
| Symbol | |
|---|
| ID | 5109107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1452069 |
|---|
| End bp | 1452716 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640502517 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001186788 |
|---|
| Protein GI | 146306323 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCTT ACGAAATCCT GATTGCCGAC GATCACCCGC TGTTTCGCAG CGCACTGCAA
CAAGCATTGA CCCTGGGGCT GGGGCCCGAA GTAAGGCTGG TGGAAGCCGC CAGCATCGCC
GAGCTGGAGG CCTGTCTGGC CGCCAAGAAT GACTGGGATC TGGTTCTGCT CGATCTCAAC
ATGCCCGGCG CTTACGGCTT TTCCGGTCTG GTGCTGCTGC GCGGGCAGTA TCCGCAGATC
CCCGTGGTGA TGATCTCCGC CCAGGAGGAA GCCTCGGTGG TCAACCGTTC GCGCGAGTTT
GGCGCCAGCG GCTTCATCCC CAAGTCCAGC CCCCTGGAAA CCATTCAGCT GGCCGTGCGT
CAGGTGCTCG ACGGCGATAC CTGGTGGCCG CCCATGGCGG AGGAGAGTGC ACCGGTTTCC
GAAGAGGCCA AGGCCGCCGG CGCCGGGCTG GCCAGCCTTA CCCCGCAGCA GTTCCGCGTG
CTGACCATGG TCTGCGAAGG CCTGCTGAAC AAGCAGATCG CCTATGAGCT GAGCGTGTCC
GAGGCTACCG TCAAGGCTCA CGTCACCGCC ATCTTCCGCA AGCTCGGGGT GCGTACCCGC
ACCCAGGCGG CGTTGCTGCT GCAGCAGATG GAATCGATTC CGGGTTGA
|
|---|
| Protein sequence | MAAYEILIAD DHPLFRSALQ QALTLGLGPE VRLVEAASIA ELEACLAAKN DWDLVLLDLN
MPGAYGFSGL VLLRGQYPQI PVVMISAQEE ASVVNRSREF GASGFIPKSS PLETIQLAVR
QVLDGDTWWP PMAEESAPVS EEAKAAGAGL ASLTPQQFRV LTMVCEGLLN KQIAYELSVS
EATVKAHVTA IFRKLGVRTR TQAALLLQQM ESIPG
|
|---|
| |