| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1288 |
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| Symbol | |
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| ID | 5109104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1448492 |
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| End bp | 1450189 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640502514 |
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| Product | aromatic hydrocarbon degradation membrane protein |
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| Protein accession | YP_001186785 |
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| Protein GI | 146306320 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2067] Long-chain fatty acid transport protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAATGC TCTCTCGGCG CTGGCCATCG CCCCTGATGG TTGGCAGTTT ACTGGTTTTG
CCCGTGGTTC AGGTGCAGGC ATCCGGTTAT CACTTCGGTT CGCAGTCGGT CGCGGCGCAG
GGTTCGGCGC ATGCCAACGG CGCCGAGGCA GCCGATGCCT CGACCATCTT CTACAACCCC
GCCGGGCTGG CCCGGCTCAA GGGCACCCAG CTCACCTCCG GGTTGACGAT TCTGCTGCCG
GACGGCAAGT ACGAGGACAA GGGCAGCCGC GACGTGTTCG GCAACCCGGT ATCGGGCGAT
GCCGGCGAGT TTCTCCCCGA TGCGGCGGCA GCGCCGAATT TCTACTTCTC CCACGAGATC
AACGAGCGGG TGACGGTCGG CCTCGGCATC TTCACCCCCT TCGGCGCCAA GCTCGACTAC
AAGGAAGACT GGGCGGGGCG CTACGGCATT CAGTCGGCCA GCCTGGAGAC GGTGACCTTC
AACCCGAGCA TCGCCTTTCG TTTCAACGAC CATCACAGCA TCGGCTTCGG TGTTTCGGCG
CAGTACATCA AGTCGGTGCA GCGCGGCGCG GCGGACGTCA AAGGTGCTTC GCGACAGTTG
GCCGGGCAGT TCGTCGATGC CAACTATGAC AGCACCCGTA ACGCGGCCGA CCCCATTCTC
GGGCCTATCG TCGGGATCAT CGCCGGGGTT CCGGTGCCGG AAGAAATCAC CTCCTGTCGC
GGCGTCGCGG ACAGAGACGG CTTCGTCGAT TGCGTCGCCA GCAACTTCGC CGACAACGTT
CAGGGCGACG GCTACTTCCG GGTAAAGGGT GATGACTGGG GCTTCGGCTG GAATATCGGC
TACATGTGGG AGCCGACCGA ATCGACACGC TTTGGCGTGG CCTATCGCTC CAACATTCGC
CACACCCTGG AAGGGGAGAC CAAATGGAGT TTCGCCGGTG TGCAAGGCAG CGTTCCTTCG
CCGGATACCT CGCTCGAGGG CGGTTTCACC ATTCCCATCC TGGACATCTA TGTGCCGCCG
ACCGATGCCC TGCGGGAGCT GTTCGATGAG GGCAACTGGG TCAATCCCGG CGATTTCGCT
GCCACCCGGC TGCACCCCAA TTCCAAGGCC AAGACCGCCA TCGACACGCC GGAGATGCTT
TCCTTCAATG CCTTCCACCA GCTCAACGAC AAGGTGGCGC TGATGGCGGA CCTGACCTTC
ACCCGCCATT CACGGCTCGA TGAAGTGCGT ATCGGCATCG ACCAGGTCGC CGGCTATCCC
TACTTCAACG GCGTCACCGA GGGCGACCTC AGCGTCAAGC AGGACTGGAA GGACACCTAC
AAGATCTCCC TGGGCATGAA CTACCAGTAC AGCGACGACC TCTTGTTGCG CACCGGGGTG
GCGTACGACA AGTCGCCCGT CAATTCGACC CAGTTGCGTC ACCCAGCGTT TCCCGACGCC
GATCGCTACT GGCTGTCGTT CGGTGCCAAC TACAAGGTGA CCCGCGACAC CTCGCTGGAC
TTCGCCTACA GCTACGTGCA GTTCTCCAGC GGCAAGATGG ACTACCAGGA CGGCTGCTCG
CCGGCCGGTT GGGTGCCGGG CAGCGGTGGG CTGTACCAGG ACAGCGGCGT GCGCTGCACC
GGCAACGGCG GCAATTTCAC CGGCGAGTAC GAGACGCGCA TCCATTTCAT CGGCCTGGCC
TTGAACCACA CCTTCTGA
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| Protein sequence | MTMLSRRWPS PLMVGSLLVL PVVQVQASGY HFGSQSVAAQ GSAHANGAEA ADASTIFYNP
AGLARLKGTQ LTSGLTILLP DGKYEDKGSR DVFGNPVSGD AGEFLPDAAA APNFYFSHEI
NERVTVGLGI FTPFGAKLDY KEDWAGRYGI QSASLETVTF NPSIAFRFND HHSIGFGVSA
QYIKSVQRGA ADVKGASRQL AGQFVDANYD STRNAADPIL GPIVGIIAGV PVPEEITSCR
GVADRDGFVD CVASNFADNV QGDGYFRVKG DDWGFGWNIG YMWEPTESTR FGVAYRSNIR
HTLEGETKWS FAGVQGSVPS PDTSLEGGFT IPILDIYVPP TDALRELFDE GNWVNPGDFA
ATRLHPNSKA KTAIDTPEML SFNAFHQLND KVALMADLTF TRHSRLDEVR IGIDQVAGYP
YFNGVTEGDL SVKQDWKDTY KISLGMNYQY SDDLLLRTGV AYDKSPVNST QLRHPAFPDA
DRYWLSFGAN YKVTRDTSLD FAYSYVQFSS GKMDYQDGCS PAGWVPGSGG LYQDSGVRCT
GNGGNFTGEY ETRIHFIGLA LNHTF
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