| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1276 |
|---|
| Symbol | |
|---|
| ID | 5109092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1435709 |
|---|
| End bp | 1436689 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640502501 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | YP_001186773 |
|---|
| Protein GI | 146306308 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain
[TIGR02794] TolA protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.274487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.431648 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAGA CCGAGCGTTC GCAGTCGGAA AGCTACTTCT GGCCCGTGGT CTGGGCCGTG
GGTCTGCACG TCCTGATGTT CGCCATGCTG TTCGTCAGCT TCGCCTTCAC GCCCGAACTG
CCGCCAGCGC GTCCGGTGGT GCAGGCCACC CTGTACCAGT TGCAGTCGCA GAGCCAGGCC
ACCACCCAGA CCACGCAGAA GGTGGCAGGC GAGGCGCAGA AGACCTCGGC GCCGCAGTTC
GAGACCGAGA GGCTCGAGCA GAAGAAGGCC GAGGAGCAGA AGCAGGCCCA GGCCGAAGCG
CAGAAGGTAG CCGCGGCCAA GAAAGCCGAG GAACAAAAGA AGGCGGAAGA GGCTCGAAAG
GCCGAACAGG CCAAAGCCGA AGCAGCGAAG AAGGCCGAAG CCGAAAAGGC GGCCGAGCAG
AAGCGTCAGG CCGATATCGC CAAGAAGCGC GCCGAGGAAG AAGCGAAGAA GAAAGCCGCT
GAAGAGGCCA AGAAAAAGGC CGCTGCAGAA GACGCGAAGA AGAAGGCGGC AGCTGCCGAG
GCAGCGAAGA AGAAGGCCGC CGAGGATGCC AAGCGCAAGG CCGAAGAGGC CCGACGCAAG
GCAGCCGAGG ATCAGAAGGC GGCGGCGCTG GCCGAGTTGC TCTCGGACAA CGTGCAGAAC
CAGCAGGCGC TGGCCGAAAC CCATGGCGAC AAGGTGGCGG GTAACCTTGA TGATCTGATC
ATCAAGCTGA TCACCGAGAA CTGGCAGCGA CCGATGTCGG CGCGCCGCGG CATGAGCGTC
GAGCTGCTGA TCCAGATGCT GCCCGATGGC ACCGTGACCA ATGCCAGCGT ATCGCGCTCC
AGTGGCGATG CGCCGTTCGA CAGCTCGGCC GTGGCTGCGG TACGTAACGT CGGGCGTATT
CCCGAGATGC AACAATTGGA TCGCGCTACC TTCGACCGTA TGTACAGGCA GCGTCGCGTC
ATTTTCAAAC CGGAGGATTG A
|
|---|
| Protein sequence | MQQTERSQSE SYFWPVVWAV GLHVLMFAML FVSFAFTPEL PPARPVVQAT LYQLQSQSQA
TTQTTQKVAG EAQKTSAPQF ETERLEQKKA EEQKQAQAEA QKVAAAKKAE EQKKAEEARK
AEQAKAEAAK KAEAEKAAEQ KRQADIAKKR AEEEAKKKAA EEAKKKAAAE DAKKKAAAAE
AAKKKAAEDA KRKAEEARRK AAEDQKAAAL AELLSDNVQN QQALAETHGD KVAGNLDDLI
IKLITENWQR PMSARRGMSV ELLIQMLPDG TVTNASVSRS SGDAPFDSSA VAAVRNVGRI
PEMQQLDRAT FDRMYRQRRV IFKPED
|
|---|
| |