Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1275 |
Symbol | |
ID | 5109091 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1435257 |
End bp | 1435709 |
Gene Length | 453 bp |
Protein Length | 150 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640502500 |
Product | biopolymer transport protein ExbD/TolR |
Protein accession | YP_001186772 |
Protein GI | 146306307 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0848] Biopolymer transport protein |
TIGRFAM ID | [TIGR02801] TolR protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.146064 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.370968 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAGAA TTCGCAACAG ACGCAAACCG GTCGCCGAGA TGAACGTGGT GCCCTACATC GACGTGATGC TGGTGCTGCT GGTCATCTTC ATGGTCACCG CGCCCATGCT CAACCAGGGC GTCAAGGTCG ACCTGCCCAA GGTCAGCAGC GAAGCGCTGC CGCAGGACAA CGACGCCCAG GTGCTGACCA TTTCCATCAA GGCCGACAAG ACCTACTACT GGAACATGGG CAGCGAGGTC GACGTCGATA CCGAGCAGGA GCGCGCCTCC ACCCTCGAGC AGATGACTCA GGCGGTTTCG GCGATCATTG CCGAGAACCG TCGCCAGGGT AAGCAGGTGC AGGTGTTCGT GCGCGGTGAT CGCACCGTCG ACTACGGCAC CGTGATGGCG GCCATGGGCG GCTTGCAACA GGCCGACGTG GGCAACGTCG GATTGATTAC CGAGGCGCCC TGA
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Protein sequence | MARIRNRRKP VAEMNVVPYI DVMLVLLVIF MVTAPMLNQG VKVDLPKVSS EALPQDNDAQ VLTISIKADK TYYWNMGSEV DVDTEQERAS TLEQMTQAVS AIIAENRRQG KQVQVFVRGD RTVDYGTVMA AMGGLQQADV GNVGLITEAP
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