Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1250 |
Symbol | |
ID | 5109066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1410159 |
End bp | 1411649 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640502475 |
Product | sodium/proline symporter |
Protein accession | YP_001186747 |
Protein GI | 146306282 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.654808 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.469552 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAGC AGAACGTTCT TGTTGTAGGG GTGACCTTCG TGGTCTACCT GGTGCTGATG TTGTGGCTGG GCATCGTTGC CTATCGCCGT ACCAGCAGCC TGTCCGACTA CATCCTCGGC GGCCGTTCCA TCGGCCCGAC CACCGCGGCC CTGTCCGCCG GCGCTTCCGA CATGAGCGGC TGGCTGCTCC TGGGCCTGCC GGGCTACGCA CTGGTAGCCG GCTTCGAGGC CTCCTGGATC GCCATCGGCC TGCTGGCCGG CACCTGGCTG AACTGGCTGT TCGTTGCTCG TCGCCTGCGC GTTTACTCCC ACGCAGCCAG CGACTCGGTG ACCATGCCGT CCTACTTCGA GCATCGCTTC AACGACAAGT CCCATGCGCT GCGCGTGATC TCGGCCATCT TCATTCTGCT GTTCTTCCTC TTCTACGCCA GCTCCGGTCT GGTCGCAGCC GGCAAGCTGT TCGAGACCGT ATTCGGCTTC GACTACCGAA TCGCCGTGGT CATCGGCACC CTGGCCGTTG TCTCCTACAC CCTGTTCGGT GGCTTCCTCG CCGTGGCCTG GACCGACGTG GTGCAAGGCC TGCTGATGGC CGCCGCGCTG GTGCTGGTGC CGGTGTTCGC CCTCAACGCG GTGGGTGGCG TGGACGCCGC GCATGCCGCC ATCGTGGCCA AGAACCCCGA GCTGCTGACC TTCTTCAATG ACGCCAAGGG CCAGCCGCTG GGCATCATCG CCATCCTTTC GCTGCTTGGC TGGGGCCTGG GCTACTTCGG TCAGCCGCAC ATCCTGGCGC GCTTCAAGGC GATTTCCGAC GACAAGGACA TGCCCACCGC TCGCCGTATC GCCGTGGGCT GGACCGCACT GACCCTGTTC GCTGCCCTGG CCATCGGCTG GGTCGCCGTG GGCTACCTGG AGACCGATCT GGGCGATGCC GAGACCGTGT TCATGGTGCT GGTCAACAGC CTGTTCCACC CGGTGGTCGC CGGTATCCTG ATGGCGGCCG TACTGGCCGC GATCATGTCC ACCGCCGATT CGCAGCTGCT GGTGAGCTCC TCGGCCCTGG CCGAAGATTT CTACAAGGCG ATCCTGAAGA AGGACGCCGG TGGCGCGGAA CTGGTCTGGA TCGGCCGTGG CGCCGTGGTG GCGATCGCCA TCGTCGCCCT GATCCTGGCG CTGAACCCGG ACACCACCGT GCTGGGCCTG GTGTCCTACG CCTGGGCTGG TTTCGGTGCC GCCTTCGGCC CGGCCATCAT CCTGTCGCTG TACTGGAAGC GGATGAACCG CAACGGTGCG CTGGCCGGCA TCCTGCTGGG CGGCATCACC GTGGTGGTGT GGAAGCAGCT GTCCTCCATG GGCGGCATCT TCGGCCTGTA CGAGATCATC CCGGGCTTCA TCCTCGCCAC TCTCGCCATC GTCGTGGTCA GCCTGATCAC CGAAGAGCCG GAAGCGGCCG TCCAGGCGCA GTTCGACGAC GTCGAGCGCA AACTGGCGTA A
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Protein sequence | MSEQNVLVVG VTFVVYLVLM LWLGIVAYRR TSSLSDYILG GRSIGPTTAA LSAGASDMSG WLLLGLPGYA LVAGFEASWI AIGLLAGTWL NWLFVARRLR VYSHAASDSV TMPSYFEHRF NDKSHALRVI SAIFILLFFL FYASSGLVAA GKLFETVFGF DYRIAVVIGT LAVVSYTLFG GFLAVAWTDV VQGLLMAAAL VLVPVFALNA VGGVDAAHAA IVAKNPELLT FFNDAKGQPL GIIAILSLLG WGLGYFGQPH ILARFKAISD DKDMPTARRI AVGWTALTLF AALAIGWVAV GYLETDLGDA ETVFMVLVNS LFHPVVAGIL MAAVLAAIMS TADSQLLVSS SALAEDFYKA ILKKDAGGAE LVWIGRGAVV AIAIVALILA LNPDTTVLGL VSYAWAGFGA AFGPAIILSL YWKRMNRNGA LAGILLGGIT VVVWKQLSSM GGIFGLYEII PGFILATLAI VVVSLITEEP EAAVQAQFDD VERKLA
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