Gene Pmen_1250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1250 
Symbol 
ID5109066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1410159 
End bp1411649 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content65% 
IMG OID640502475 
Productsodium/proline symporter 
Protein accessionYP_001186747 
Protein GI146306282 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0591] Na+/proline symporter 
TIGRFAM ID[TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.654808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.469552 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGC AGAACGTTCT TGTTGTAGGG GTGACCTTCG TGGTCTACCT GGTGCTGATG 
TTGTGGCTGG GCATCGTTGC CTATCGCCGT ACCAGCAGCC TGTCCGACTA CATCCTCGGC
GGCCGTTCCA TCGGCCCGAC CACCGCGGCC CTGTCCGCCG GCGCTTCCGA CATGAGCGGC
TGGCTGCTCC TGGGCCTGCC GGGCTACGCA CTGGTAGCCG GCTTCGAGGC CTCCTGGATC
GCCATCGGCC TGCTGGCCGG CACCTGGCTG AACTGGCTGT TCGTTGCTCG TCGCCTGCGC
GTTTACTCCC ACGCAGCCAG CGACTCGGTG ACCATGCCGT CCTACTTCGA GCATCGCTTC
AACGACAAGT CCCATGCGCT GCGCGTGATC TCGGCCATCT TCATTCTGCT GTTCTTCCTC
TTCTACGCCA GCTCCGGTCT GGTCGCAGCC GGCAAGCTGT TCGAGACCGT ATTCGGCTTC
GACTACCGAA TCGCCGTGGT CATCGGCACC CTGGCCGTTG TCTCCTACAC CCTGTTCGGT
GGCTTCCTCG CCGTGGCCTG GACCGACGTG GTGCAAGGCC TGCTGATGGC CGCCGCGCTG
GTGCTGGTGC CGGTGTTCGC CCTCAACGCG GTGGGTGGCG TGGACGCCGC GCATGCCGCC
ATCGTGGCCA AGAACCCCGA GCTGCTGACC TTCTTCAATG ACGCCAAGGG CCAGCCGCTG
GGCATCATCG CCATCCTTTC GCTGCTTGGC TGGGGCCTGG GCTACTTCGG TCAGCCGCAC
ATCCTGGCGC GCTTCAAGGC GATTTCCGAC GACAAGGACA TGCCCACCGC TCGCCGTATC
GCCGTGGGCT GGACCGCACT GACCCTGTTC GCTGCCCTGG CCATCGGCTG GGTCGCCGTG
GGCTACCTGG AGACCGATCT GGGCGATGCC GAGACCGTGT TCATGGTGCT GGTCAACAGC
CTGTTCCACC CGGTGGTCGC CGGTATCCTG ATGGCGGCCG TACTGGCCGC GATCATGTCC
ACCGCCGATT CGCAGCTGCT GGTGAGCTCC TCGGCCCTGG CCGAAGATTT CTACAAGGCG
ATCCTGAAGA AGGACGCCGG TGGCGCGGAA CTGGTCTGGA TCGGCCGTGG CGCCGTGGTG
GCGATCGCCA TCGTCGCCCT GATCCTGGCG CTGAACCCGG ACACCACCGT GCTGGGCCTG
GTGTCCTACG CCTGGGCTGG TTTCGGTGCC GCCTTCGGCC CGGCCATCAT CCTGTCGCTG
TACTGGAAGC GGATGAACCG CAACGGTGCG CTGGCCGGCA TCCTGCTGGG CGGCATCACC
GTGGTGGTGT GGAAGCAGCT GTCCTCCATG GGCGGCATCT TCGGCCTGTA CGAGATCATC
CCGGGCTTCA TCCTCGCCAC TCTCGCCATC GTCGTGGTCA GCCTGATCAC CGAAGAGCCG
GAAGCGGCCG TCCAGGCGCA GTTCGACGAC GTCGAGCGCA AACTGGCGTA A
 
Protein sequence
MSEQNVLVVG VTFVVYLVLM LWLGIVAYRR TSSLSDYILG GRSIGPTTAA LSAGASDMSG 
WLLLGLPGYA LVAGFEASWI AIGLLAGTWL NWLFVARRLR VYSHAASDSV TMPSYFEHRF
NDKSHALRVI SAIFILLFFL FYASSGLVAA GKLFETVFGF DYRIAVVIGT LAVVSYTLFG
GFLAVAWTDV VQGLLMAAAL VLVPVFALNA VGGVDAAHAA IVAKNPELLT FFNDAKGQPL
GIIAILSLLG WGLGYFGQPH ILARFKAISD DKDMPTARRI AVGWTALTLF AALAIGWVAV
GYLETDLGDA ETVFMVLVNS LFHPVVAGIL MAAVLAAIMS TADSQLLVSS SALAEDFYKA
ILKKDAGGAE LVWIGRGAVV AIAIVALILA LNPDTTVLGL VSYAWAGFGA AFGPAIILSL
YWKRMNRNGA LAGILLGGIT VVVWKQLSSM GGIFGLYEII PGFILATLAI VVVSLITEEP
EAAVQAQFDD VERKLA