| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1227 |
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| Symbol | |
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| ID | 5108728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1388421 |
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| End bp | 1390760 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640502452 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001186724 |
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| Protein GI | 146306259 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.148378 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGCA GTAGCTTCCA GGCGCGTATC AGCGGCGTCC TCATCCTGCT GTTGCTGGTG
GTGATCGGCG CCCTCTATGT CGCGGTGAAG GCCGCCACCG ATGCCGCAGT ACGCGCCCAG
GCGCAGGAGC AGCTGAACGT CGGCAGTCTC GTCTTCGAGC AGCTGCTGGC GCTGCGCAGC
GACCAGCTGC AGCAGGCTGC TCAGGTACTG GCGGCCGATT TCGGCTTCAA GGAGGCGGTG
GCCAGCGGCG ATGCGCCGAC CATCCGCTCG GCACTGGCCA ACCAGGGCGC GCGCATCAAC
GCCGACGCGG TGTTCCTGCT GGGGCTGGAC GGCAGCCTGC AGGTGAGTAC CGACCCGGAC
ATCGACGCCG AGGCGCTGGC CCGTATGGAC GGCCAGCTGC AGCGGCCACA GCGCGACGGG
TCGCGGCTGT TCCTGCTGCC CATCGGCAGG CAGATCTATC TGCTGGTGGA TGCCACGGTG
AGCGCACCGC TGCCGATCGC CCGAGTGCTG ATGGGCTTTG CCGTGGACCG CGAATTCGCC
GTGCAGCTGC GCGAGCTGAC CCACCTGGAG CTGAGCCTGG TGGCCAGTCG CGACGGTGCG
GCGCCGACCT GGATCAGCAC CCTGCCGGCC AGCGCCCAGG CGCTGCTGCA AGCGCAGATG
AAGGCCGCCG GCGCGATGCC GCAGCGTCTC GACGGCGGCA GCGAGCACTA CTTCGGCCAG
CACCTGCAAC TGGCCAGCGG CCCCGGCTAT CGCGTCGAGG CGCTGCTGCA CAAGTCCCTC
GGCGAGGCCG AGGCGGCGTT CGCACCGCTG GATCGGCGCA TCCTGCTGAT CAGTCTGGGG
GCCATGCTCG CCTCGCTGAT CGGTGCGCTG CTGCTGGCGC GCAGCCTGTC GCGACCGGTG
CGCGAACTGG CCGCTGCCGC CCAGCGCATC GGCCGTGGCG ACTATCAGCA GCCGGTGGCC
CTGGCCCGCA GCGACGAGCT GGGCCTGCTG GCGCTGGCGG TCAACGACAT GCAGCGCGGC
ATCGCCGAGC GCGAGCGGCA GCTGGCGCAC AACGCCCTGC ACGACGCGCT GACCGGCCTG
CCCAACCGCA CCCTGGCGCT GGAGCGGCTG GGCAGCGCGA TCACCGCCGG GAGGCCCACG
GCGCTGCTGT ATCTGGGCGT GGGCAACTTC GCCGCGATCA ACGAGAGCTG TGGCCAGGGC
GGCGGCGACC TGGCCCTGCA GCAGCTGGCC CGGCGCCTGC AGGCGACCCT GCGCCCCGGC
GACAGCCTGG CGCGCCTGGT GGGCGATGAG TTCCTCCTGC TGCTGGAGCA GTGCGACGGC
AGCAGTGCAG TGGCCAGCGC CGACCGTCTC CATCAGCTGC TGCTCAAGCC GCTGCGCATC
GGCACGCTGG ACATCGCTCT GGACTGCCGC ATCGGCATTG CCGCCTACCC GGCCGACGGC
GACACGCCGG ACGATCTGCT GCGCCGTGCG CGCATCGCCA TGCAGGACGC GGCCCAGCAT
TCCGGGCGCC TGCAGCTCTA CCAGCAGGGC CGCGACGCCG CCCAGCAGCG GCAGATCCGC
CTGATCCGCG ATCTGCGCCA CGCCGCCGCG CAGGGCCAGC TGCTGTTGCA CTACCAGCCC
AAGCTGGACA TCCGCGAGGG TCTCGTGCGC CAGGCCGAGG CGCTGCTGCG CTGGCAGCAT
CCGCAGCTGG GCATGGTCTC GCCCGGCGAG TTCATTCCGC TGGCCGAGCG CACCGGCAGC
ATCCAGCTGC TTTCCGCCTG GGTCATCGAG GAGGCCATGC GCCAGCTGCA GGAGTGGGAC
GGGCGCGGCA TCTGGGTACA GCTGTCGCTG AACATCTCTA CCGCAGACCT GCTCGACGCC
GAGCTGCCGG GGCGCGTTGG CGCACTGCTG GCACGCTACC GGGTAGCGCC TGAGCAATTG
ATCTTCGAAA TCACCGAGAG CGGGGTGATG CTCGATCCCG AGCGCGCGTT GCAGGTGCTG
CACGGCTTGC GTGGCTACGG CATCGGCCTG TCGGTGGACG ATTTCGGCAC CGGCTATTCC
TCGCTGGCGC AACTCAAGCG CATGCCGGTG CAGGAGCTGA AGATCGACCA GAGTTTCATC
CGCGAGCTGG ACGACCACAG CGAGGACTCG GTGATCGTTC GCTCCACCAT CGAAATGAGC
CACAGCCTGG GCCTGAAGGT GGTGGCCGAG GGCGTCGAAC TGGCGTCCGG CCTGAATCTT
TTGCAGCGTT GGCACTGCGA TACCGCACAG GGCTACCTGA TCAGTCGACC GCTGGCCGCC
GCGGCCTTCG AAGCCTGGCT GGCACAGCCC TATCGTCCCC CCCTGGCCAA GGTGCACTGA
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| Protein sequence | MLRSSFQARI SGVLILLLLV VIGALYVAVK AATDAAVRAQ AQEQLNVGSL VFEQLLALRS
DQLQQAAQVL AADFGFKEAV ASGDAPTIRS ALANQGARIN ADAVFLLGLD GSLQVSTDPD
IDAEALARMD GQLQRPQRDG SRLFLLPIGR QIYLLVDATV SAPLPIARVL MGFAVDREFA
VQLRELTHLE LSLVASRDGA APTWISTLPA SAQALLQAQM KAAGAMPQRL DGGSEHYFGQ
HLQLASGPGY RVEALLHKSL GEAEAAFAPL DRRILLISLG AMLASLIGAL LLARSLSRPV
RELAAAAQRI GRGDYQQPVA LARSDELGLL ALAVNDMQRG IAERERQLAH NALHDALTGL
PNRTLALERL GSAITAGRPT ALLYLGVGNF AAINESCGQG GGDLALQQLA RRLQATLRPG
DSLARLVGDE FLLLLEQCDG SSAVASADRL HQLLLKPLRI GTLDIALDCR IGIAAYPADG
DTPDDLLRRA RIAMQDAAQH SGRLQLYQQG RDAAQQRQIR LIRDLRHAAA QGQLLLHYQP
KLDIREGLVR QAEALLRWQH PQLGMVSPGE FIPLAERTGS IQLLSAWVIE EAMRQLQEWD
GRGIWVQLSL NISTADLLDA ELPGRVGALL ARYRVAPEQL IFEITESGVM LDPERALQVL
HGLRGYGIGL SVDDFGTGYS SLAQLKRMPV QELKIDQSFI RELDDHSEDS VIVRSTIEMS
HSLGLKVVAE GVELASGLNL LQRWHCDTAQ GYLISRPLAA AAFEAWLAQP YRPPLAKVH
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