| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1223 |
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| Symbol | |
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| ID | 5108724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1383390 |
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| End bp | 1385786 |
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| Gene Length | 2397 bp |
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| Protein Length | 798 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502448 |
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| Product | ATP-dependent protease La |
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| Protein accession | YP_001186720 |
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| Protein GI | 146306255 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0466] ATP-dependent Lon protease, bacterial type |
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| TIGRFAM ID | [TIGR00763] ATP-dependent protease La |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.00879429 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACGATC AGGACATCAA CTCCGAGGCA GTCGAAGACA AGGTGCAGGT CGGTAGTACC
GGCCTGGTGC TCCCCGCCCA GCAACTGCCG GACAAGCTCT ACGTCATCCC CATTCACAAC
CGCCCGTTCT TCCCGGCGCA GGTGCTGCCG GTGATCGTCA ACCAGCATCC CTGGGGACGC
ACGCTCAACC GCGTGGGCAA TACCGAGCAC AAGTGCCTGG CGGTGTTCTA CGTCGACAAT
CCGCCGGACG AGAATGGCGA GTTCGACCTG GCCAGCCTGC CCGAGCACGG CACCCTGGTC
CGCGTGCACC ATGTCAGCGA GGAAGGCGGC AAGCTGCAGT TCGTCGCCCA GGGCCTGACC
CGCGTGCGCA TCCGCGGCTG GCTGAGCCGG CGCGGCCCGT ACCTGGCCGA GGTGGATTAT
CCCCAGGCCC CGAGCGACCC GCGCGACGAA GTGAAGGCCT ACGGCATGGC ACTGATCAAC
GCGATCAAGG AGCTGCTGCC GCTCAACCCG CTGTACAGCG AGGAGTTGAA GAACTACCTC
AACCGCTTCA GCCCCAACGA GCCGTCGCCG CTGACCGATT TCGCCGCGGC GCTCACCACC
GCACCCGGCC ATGAGCTGCA GGAAGTGCTC GACTGCGTGC CGATTCTCAA GCGCATGGAG
AAGGTGCTGC CGCTGCTGCG CAAGGAAGTG GAAGTGGGCC GCCTGCAGAA GGAGCTGTCG
GCCGAGGTGA ACAGACAGAT CGGCGAGCGC CAGCGCGAGT TCTTCCTCAA GGAGCAGCTC
AAGCTGATCC AGCAGGAACT GGGCATCAGC AAGGACGACA AGAGCGCCGA CCGCGAGGAG
TTCCTCGCCC GCCTCGAAGG CAAGACCCTG CCGGCGCCGG TGCGCAAGCG CATCGACGAG
GAGCTGAACA AGCTGTCGAT CCTCGAGACC GGCTCGCCGG AGTACGCCGT CACGCGCAAC
TACCTGGACT GGGCCACCGC GCTGCCCTGG GGCATCCACG GCCAGGACAA GCTCGACCTC
GGCCGCGCAC GCAAGGTGCT GGACAAGCAC CACGCCGGCA TGGACGACAT CAAGCGGCGC
ATCACCGAGT TTCTCGCCGT CGGCGCCTTC AAGGGCGAGA TCGCCGGCTC CATCGTGCTG
CTGGTCGGCC CGCCCGGCGT GGGCAAGACC AGTATCGGCA AGTCCATCGC CGAATCCCTC
GGCCGGCCCT TCTACCGTTT CTCGGTGGGC GGCATGCGTG ACGAGGCGGA GATCAAGGGC
CACCGCCGCA CCTACATCGG CGCCATGCCC GGCAAGCTGG TGCAGGCGCT GAAGGAAGCC
GAGGTGATGA ACCCGGTGAT CATGCTCGAC GAGATCGACA AGATGGGCAC CAGCTACCAG
GGCGACCCGG CCTCGGCGCT GCTGGAAACC CTCGATCCGG AGCAGAACGT CGAGTTCCTC
GACCACTACC TGGACCTGCG CCTGGACCTG TCCAAGGTGC TGTTCGTGTG TACCGCCAAC
ACGCTGGATT CCATCCCCGG GCCGCTGCTA GACCGCATGG AGGTGATCCG CCTGTCCGGC
TACATCACCG AGGAAAAGCT GGCCATCGCC AAGCGCCACC TGTGGCCCAA GCAGCTGGAA
AAGGCCGGCG TGCCAAAGGC GCGCCTGTCC ATCAGCGACG CGGCGCTGCG CGCGGTGATC
GAAGGCTATG CCCGCGAAGC CGGCGTGCGC CAGCTGGAGA AACAGCTGGG CAAGCTGGTG
CGCAAATCGG TGGTCCGGCT GCTGGAGGAT CCCGAGGCGA AGATCCGCAT CGGCGCCAAG
GACCTGGAGG AAGCCCTCGG CATGCCGGTA TTCCGCAACG AGCGGGTGCT GGCCGGCGTC
GGTGTGATCA CCGGGCTGGC CTGGACCAGC ATGGGCGGCG CCACCCTGCC GATCGAGGCG
ACGCGCATCC ACACGCTCAA CCGTGGCTTC AAGCTCACCG GCCAGCTCGG CGAGGTGATG
AAGGAGTCGG CGGAGATCGC CTACAGCTAC GTCAGCTCGC ACCTGAAGCA GTTCGGCGGC
GACCCGACCT TCTTCGACCA GGCCTTTGTT CACCTGCACG TGCCGGAAGG CGCCACGCCC
AAGGACGGCC CCAGCGCCGG CATCACCATG GCCAGCGCCC TGCTCTCCCT GGCGCGCAAC
CAGGCGCCGA AAAAGGGCGT GGCCATGACC GGCGAGCTGA CCCTCACCGG CCAGGTGCTG
CCCATCGGCG GCGTACGCGA GAAGGTCATC GCGGCGCGGC GGCAGAAGAT CCACGAACTG
ATCCTGCCGG AGGCCAACCG TGGCAGCTAC GAGGAACTGC CGGACTATCT CAAGGAAGGC
CTGACGGTGC ATTTCGCCAG GCGTTATGGC GACGTGGCCA GGGTGCTTTT CGACTAA
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| Protein sequence | MNDQDINSEA VEDKVQVGST GLVLPAQQLP DKLYVIPIHN RPFFPAQVLP VIVNQHPWGR
TLNRVGNTEH KCLAVFYVDN PPDENGEFDL ASLPEHGTLV RVHHVSEEGG KLQFVAQGLT
RVRIRGWLSR RGPYLAEVDY PQAPSDPRDE VKAYGMALIN AIKELLPLNP LYSEELKNYL
NRFSPNEPSP LTDFAAALTT APGHELQEVL DCVPILKRME KVLPLLRKEV EVGRLQKELS
AEVNRQIGER QREFFLKEQL KLIQQELGIS KDDKSADREE FLARLEGKTL PAPVRKRIDE
ELNKLSILET GSPEYAVTRN YLDWATALPW GIHGQDKLDL GRARKVLDKH HAGMDDIKRR
ITEFLAVGAF KGEIAGSIVL LVGPPGVGKT SIGKSIAESL GRPFYRFSVG GMRDEAEIKG
HRRTYIGAMP GKLVQALKEA EVMNPVIMLD EIDKMGTSYQ GDPASALLET LDPEQNVEFL
DHYLDLRLDL SKVLFVCTAN TLDSIPGPLL DRMEVIRLSG YITEEKLAIA KRHLWPKQLE
KAGVPKARLS ISDAALRAVI EGYAREAGVR QLEKQLGKLV RKSVVRLLED PEAKIRIGAK
DLEEALGMPV FRNERVLAGV GVITGLAWTS MGGATLPIEA TRIHTLNRGF KLTGQLGEVM
KESAEIAYSY VSSHLKQFGG DPTFFDQAFV HLHVPEGATP KDGPSAGITM ASALLSLARN
QAPKKGVAMT GELTLTGQVL PIGGVREKVI AARRQKIHEL ILPEANRGSY EELPDYLKEG
LTVHFARRYG DVARVLFD
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