Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1175 |
Symbol | |
ID | 5108676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1323417 |
End bp | 1324667 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640502397 |
Product | outer membrane efflux protein |
Protein accession | YP_001186672 |
Protein GI | 146306207 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGTCGAGGC GTTATTCGAG AGTTGCTGAG GCACTTTGCC TGGCTGTTGC CTGCTCAGTT GTAGTGAATC ATGCCGTGGC ATCAACGCCG ATCACCCTGG GCGACGCATG GGGGCAGGCA CTGCAGACCA ACCCGTCGCT GATGGCAGGT GATCGTAATG TCGGCATCGC AGAAGGTGAG CGTCGCCAAG CCGGTGTGAT TCCCAATCCG GAGCTGTCTT GGGAGGTTGA GGACACCCGC AGTGCTACGA GGACCACGAC GGTACAGATC AGCCAACCTA TCGAGCTGGG CGGCAAGCGC GGCGCCCGGA TAGAAATGGC CGAACGCGGT ATCGACAGTG CTGCGGTCGG TCAGGAGCAG CTGCGCAATG AGCTGCGTGC CGAGGTGGTC GGGGCTTTTC AAGGAGCCTT GTTGGCGAAG ATGCGCCAAG AGTTGGCTGA GCAGTCACAA CGCCTGAGCG AACGCGGCGT GGCGGTCGTT GATGCGCGCG TCAAGGCTGG CAAGGCCTCT GCCCTGGAGG CATCGCGCGC CCGGCTGCAG TACGAAGAGG TTCGACTGGA GGCCGCGCGG GCTCGAGATC AGTACATCAA CGCCATGAAT CAGTTGCTGG CCTTGATTGG GGGGGCATCC GCCAGTGGTG AGCCTAGCCT CAGTGGCGAT GTTACCGATA TGCCCGCAAT ACCCTCTGAA GTCGCACTTC TGAGCCGTCT GGACAAAGTT CCGCAGATGC GTCTTGCCAG GGTCGAGATC GACCGGCAAG AGGCCGGAAT CGCCGTTGAG AAAAGCCGGC GGATTCCCGA TCTGACGGTC AGCCTCGGCA GCCAATACAG CAGTGAGGAT CGTGAGCGCG TCAACCTTGT TGGTTTGTCC ATGCCTCTGC CTCTGTTCGA TCGCAACCAG GGAAATGTTC TGGCCGCCTC GCGGCGGGCT GATCAGGCGC GCGACTTGCG AAATGCTGCC GAGTTGCGCC TGCGCAGTGA GGTGCAGCAG GCCTATCAGC AATGGCGAAC GGCGCAGGGA GCGATTAGCG GTTTCGAGGG GGGCCTGCTT GCGTCCGCGG ACACAGCTTT GGAAAGCACG ACGCGTGGAT TTCAGATGGG CAAGTTCGGC TTTATCGATG TTCTCGATGC CCAGCGCACA TTGATTGACG TTCGCTCCCG TTACCTGCAG GCACTCGGCG AAGCGCTCGA TGCCTGGGTT CGCCTTGAGC GCATCTACGG CGACCTATCT GCCCAAGCCG ATAACTACTG A
|
Protein sequence | MSRRYSRVAE ALCLAVACSV VVNHAVASTP ITLGDAWGQA LQTNPSLMAG DRNVGIAEGE RRQAGVIPNP ELSWEVEDTR SATRTTTVQI SQPIELGGKR GARIEMAERG IDSAAVGQEQ LRNELRAEVV GAFQGALLAK MRQELAEQSQ RLSERGVAVV DARVKAGKAS ALEASRARLQ YEEVRLEAAR ARDQYINAMN QLLALIGGAS ASGEPSLSGD VTDMPAIPSE VALLSRLDKV PQMRLARVEI DRQEAGIAVE KSRRIPDLTV SLGSQYSSED RERVNLVGLS MPLPLFDRNQ GNVLAASRRA DQARDLRNAA ELRLRSEVQQ AYQQWRTAQG AISGFEGGLL ASADTALEST TRGFQMGKFG FIDVLDAQRT LIDVRSRYLQ ALGEALDAWV RLERIYGDLS AQADNY
|
| |