Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1171 |
Symbol | |
ID | 5106558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1318463 |
End bp | 1319803 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640502393 |
Product | outer membrane porin |
Protein accession | YP_001186668 |
Protein GI | 146306203 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00378662 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.540471 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAAA GTCCTCTAAC CATGGCGATC ATCTCCGCGT TGGCATTCGG TGCAAGCGCG ATGGCTCAGG CATCCGAGTC TCAGGTTGCC GAAGGCTTCA TCGAAGGAAG TAGCCTGAAT ATTCTTAACC GAAACATGTA TTTCAACCGG GACTTTCGCA AAGGGGGGGC CAGGGTACTA CCCAGCGGTG AGCGCAGCAG CTACACCGAG GCTTGGGGGC ACGGCATCAT GGCTAACTTC GAGTCCGGTT TCACTCAGGG AACCGTTGGT TTCGGCATTG ACGCCTATGC CGGACTGGGC CTGAAGCTTG ATACCGGTGA TGGACGTTAT GGTCCCGGTG GTAGTGTCAA CATGTTCCCG GTCGACAGCG ATGATCGTGC CGAGGACTCG TATTCGAAAG TGGGGGCCGC GGTAAAGGCG CGCTTCGCTG ATACGGTCGT CAAGGCCGGT GACGTATTCC CAACCACGCC CGTCGTGCAC TACGGGGACT CTCGTCTGCT GCCGCAGAGC TTCAAAGGTG TGACGGTCGT CAACGAAAGC ATAGAGGGCC TGACCCTGCA AGGCGGTCGT CTACATGCCA TGAGCCAACC GCAGGAGAGC ACTTCACGCG GTGATTTCGC GACCTTCTAT GCTGGGCAGG TGGACTCTCC CTGGGTCGGC TACTTTGGTG GTGACTACGA GCTCAACGAC AACCTGGGCT TCAGCCTTTA CAGCAGCCGT TTGAAGGATG CCTGGGATCA GTACTACGCT GGCATGTGGT GGACTTACCC ACTTTCCGAG GATCTGTCGT TGTTTGGTGG TCTGAATTAC TACAACGCCA CCGACGAAGG TAAGAAGCAG CTGGGTGATT TCAGTAACAA CATCTATAGC GGTAGCATCG GTGTCAAGTA CGGCGCTCAC CGTGTAGCGC TCTCTCACCA GCGTAACAAC GGCGATGACG ACTTTGACTA CCTGCGTCAG TCCGACTCGA TCTTCCTCGA CAACTCCCTT CAGTACAGCG ACTTCAACTC GCCCAAGGAA CGCTCCTGGA TGGTGCGCTA CGATCTGGAC ATGGCTGACT TTGGTGTGCC AGGGCTGAGC TTCATGGCGC GTTACGCGCT GGGACGTGAT GCGGATTACT CCAATGCCAA CAGCATTTAC ATGCGCACGG ATGGTGCCGG TAACCCGCTG ACCGATCAGA AGCGCTGGGA GCGCAACCTT GAGGTCAAAT ACGTGTTCCT CGAGGGTTCT CTGAAGGATC TGTCCGTGCG TGTACGTCAG ATGACCACTC GCGCTACTGC TTACGAAAGC GACCTCGATG AAGTGCGTGT AATCGTCGAG TATCCGCTTC AGGTGCTGTA A
|
Protein sequence | MKKSPLTMAI ISALAFGASA MAQASESQVA EGFIEGSSLN ILNRNMYFNR DFRKGGARVL PSGERSSYTE AWGHGIMANF ESGFTQGTVG FGIDAYAGLG LKLDTGDGRY GPGGSVNMFP VDSDDRAEDS YSKVGAAVKA RFADTVVKAG DVFPTTPVVH YGDSRLLPQS FKGVTVVNES IEGLTLQGGR LHAMSQPQES TSRGDFATFY AGQVDSPWVG YFGGDYELND NLGFSLYSSR LKDAWDQYYA GMWWTYPLSE DLSLFGGLNY YNATDEGKKQ LGDFSNNIYS GSIGVKYGAH RVALSHQRNN GDDDFDYLRQ SDSIFLDNSL QYSDFNSPKE RSWMVRYDLD MADFGVPGLS FMARYALGRD ADYSNANSIY MRTDGAGNPL TDQKRWERNL EVKYVFLEGS LKDLSVRVRQ MTTRATAYES DLDEVRVIVE YPLQVL
|
| |