| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1094 |
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| Symbol | |
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| ID | 5108067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1229395 |
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| End bp | 1230171 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640502318 |
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| Product | cationic amino acid ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001186593 |
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| Protein GI | 146306128 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.382529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0677014 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGA TCGCTCTATT CGGCGCCCTG GCGCTGTCCA CCTTCGGCAC CTTCGCCGTC
GCCGCCGAGC CGGCGCTGCG CATCGGTATC GAAGCGGCCT ACCCGCCCTT CGCGTTCAAG
ACCGCCGACG GCAAGATCGC CGGCTTCGAC TACGACATCG GCAACGAGCT GTGCGCGCAG
ATGCAGGTCA AATGCCAGTG GGTCGAGCAG GAGTTCGACG GTCTGATTCC CTCGCTCAAG
GTGCGCAAGG TCGACGCCGT GCTGTCCTCC ATGTCCATCA CCGAAGACCG CCTGAAGTCG
GTGGACTTCT CCAAGAAGTA CTACCACACC CCCGGCAAGC TGGTGATGAA GGAAGGCAGC
CAGATCCAGG ACCCGAGCGT CGACCTCAAG GGCAAGAAGG TCGCCGTGCA GCGCGCCTCC
ACCTATGATC GCTACGCCAC CGCCGAACTG ACCCCGGCCG GCGTCAACGT GGTGCGCTAC
GGTTCCAACA ACGAAGCCTT CCTCGACCTG CTGGCAGGCC GTGTGGACGC GGTGCTGGCC
GATGTGGTGA ACATCGACGA GGGCTTCCTG AAAACCGACG GCGGCAAGGG TTTCGCCCTG
GTCGGCCCGG ACTTCAATGA CCCGCGCTAC TTCGGTCGCG GCGCCGGCAT CGCCGTGCGC
AAGGGCGATG CCGCCACCGC CGAGAAGCTC AACGCCGCCA TCGACGCCAT CCGCAGCAAC
GGCAAGTACG CCGAGGTACA AGCCAAGTAC TTCGACTACG ACATCTACGG CCGCTAA
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| Protein sequence | MNKIALFGAL ALSTFGTFAV AAEPALRIGI EAAYPPFAFK TADGKIAGFD YDIGNELCAQ
MQVKCQWVEQ EFDGLIPSLK VRKVDAVLSS MSITEDRLKS VDFSKKYYHT PGKLVMKEGS
QIQDPSVDLK GKKVAVQRAS TYDRYATAEL TPAGVNVVRY GSNNEAFLDL LAGRVDAVLA
DVVNIDEGFL KTDGGKGFAL VGPDFNDPRY FGRGAGIAVR KGDAATAEKL NAAIDAIRSN
GKYAEVQAKY FDYDIYGR
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