Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1002 |
Symbol | |
ID | 5108624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1130230 |
End bp | 1132548 |
Gene Length | 2319 bp |
Protein Length | 772 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640502219 |
Product | penicillin-binding protein 1B |
Protein accession | YP_001186502 |
Protein GI | 146306037 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000000000067337 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTCGAA AACGCTCCCC CCGCTCAAGC AAGAAATCCC GTTCCTCCGG CCTGCGCCCC TGGCTCGCCT GGGGCCTCAA GCTCGGTCTC GTCGGCTTGG TCATCCTCGC CGGTTTTGCC GTCTATCTCG ATGCCGTGGT GCAGGAGAAA TTCTCCGGCA AGCGCTGGAC GGTGCCGGCC AAGGTCTATG CACGTCCGCT GGAACTGTTC GTCGGCCAGA AGCTGGCCAA GGACGACTTC CTGCGCGAAC TGGACGCCCT GGGTTATCGC CGCGAGAGCG CGGTGAAAGG CCCGGGGGCG GTATCGGTGG CGGGCAACAA TATCGAACTG CACAGCCGCG GGTTCCAGTT CTACGAGGGC GCCGAGCCGT CGCAGCATGT GCGGGTGCGC TTCTCCGGCG ATTTCGTGGC GGGGCTGACG CAGGCCGATG GCAGCAATCT GGCCGTGGCG CGTCTGGAGC CTTTGCTGAT CGGTGGGCTG TACCCGGCGC ATCAGGAAGA TCGCATCCTG ATCAAGCTGG ATCAGGTGCC GGCCTATCTC ATCGATGCAC TGGTGGCAGT GGAGGACCGC GACTATTTCG ATCACTTCGG CGTCTCGCCC AAGGGCATCG CCCGTGCGCT GTGGATCAAC GCCACCTCCG GTCGTCTGGT GCAGGGCGGC AGTACCCTGA CCCAGCAGTT GGTGAAGAAC TTCTACCTGA CCAACGAGCG CACGCTCGGG CGCAAGATCA CCGAAGCGAT GATGGCCGTG TTGCTGGAGT TGCATTACGA CAAGCGCGAG ATTCTCGAGG CGTACATGAA CGAGGTGTTC CTCGGTCAGG ACGGTCAACG CGCGGTCCAC GGCTTCGGCC TGGCCAGTCA GTATTTCTTC AGTCAGCCGG TTTCCGAGCT CAAGCTCGAG CAGGTCGCGT TGCTGGTCGG CATGGTCAAG GGGCCGACTT TCTACAACCC GAGGCGCAAC CCCGAGCGTG CGCTGGAGCG CCGCAATCTG GTGCTTGATC TGCTGGCGGA GCAGGGCTCG ATCAGCCTCG AGGAAGCGGC TGCGGCCAAG CAGCGGCCGC TGGGCGTGAC CACGCGCGGC AGCATGGCGG ACAGTTCTTT CCCGGCGTTC CTCGACCTGG TCAAGCGTCA GTTGCGTGAA GACTATCGAG AGCAGGATCT GACCGAGGAA GGCTTGCGCA TCTTCACCAG TTTCGACCCG ATCCTGCAGC TCAAGGCCGA AGAGGCGCTG GCCGAGACGC TCAAGCGCCT GGCCGGGCGC AAGGGGGTGG ACGAGGTGCA GGCCGGGATG GTGGTGACCA ATCCCGAGAC CGGTGAGGTC CAGGCGCTGA TCGGCAGCAG GCAGCCGCGC TTTGCCGGCT TCAACCGCGC GCTGGATGCG GTGCGGCCGA TCGGCTCGCT GATCAAACCG GCGATCTACC TGGCGGCCCT GGAGCGGCCG AGCCAGTACA CCCTGACCAG CTGGCTGGAG GACGAACCCT TCTCCATCAA GGGGCAGGAC GGGCAGGTCT GGACGCCGCA GAACTTCGAT CGCAAGGCGC ATGGCACCAT CTACCTGTAC CAAGGCCTGG CCCAGTCCTA CAACCTGTCC ACGGCCAAGC TCGGCTTGGA AATCGGCGTA CCCAACGTGC TCAAGACTCT CGAGCGGCTT GGGGTGGAGC GCAAGTGGCC GGCCTATCCC TCGATGCTGC TGGGGGCGGG CGCATTGACG CCGATGGAAG TGGCGGACAT GTACCAAACC CTGGCCAACG GCGGCTTCAA TACACCGCTG CGTGGCATTC GCAGTGTGCT CACCGCCGAT GGTGAGCCGC TCGGGCGTTA TCCCTTCCAG ATCCAGCAGC GCTTCGACCC CGGCGCCATC TACCTGGTGC AGAACGCCAT GCAGCGCACC ATGCGCGAGG GCACCGGGCG CTCGGTCTAC AACCAGCTGC CCAGTTCGCT GAATCTGGCC GGCAAGACCG GTACCAGCAA CGACTCGCGC GACAGCTGGT TCGCCGGTTT CAGCCAGGAC CTGCTGGCCG TGGTCTGGCT CGGCCGTGAC GATAACGGTC CGACACCCCT GACCGGCGCC ACGGGCGCCC TGCAGGTGTG GGCGGGTTTC ATGCGCAAGG CCGATCCGCT GCCGCTGGAC ATGCCGATGC CGGACAACGT CGCCCAGGCC TGGGTGGACC GTCAGACCGG TCTGGGCTCG GCCTCGGGGT GCCCGAATGC GGTACAGATG CCTTATATTC GCGGCAGTGA GCCGGCCCCG GGCTCCGCCT GTGGATTCCA GGCACCGGTC GAGTCGGTGA TGGACTGGGT ACGCGGCTGG TTGGATTGA
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Protein sequence | MTRKRSPRSS KKSRSSGLRP WLAWGLKLGL VGLVILAGFA VYLDAVVQEK FSGKRWTVPA KVYARPLELF VGQKLAKDDF LRELDALGYR RESAVKGPGA VSVAGNNIEL HSRGFQFYEG AEPSQHVRVR FSGDFVAGLT QADGSNLAVA RLEPLLIGGL YPAHQEDRIL IKLDQVPAYL IDALVAVEDR DYFDHFGVSP KGIARALWIN ATSGRLVQGG STLTQQLVKN FYLTNERTLG RKITEAMMAV LLELHYDKRE ILEAYMNEVF LGQDGQRAVH GFGLASQYFF SQPVSELKLE QVALLVGMVK GPTFYNPRRN PERALERRNL VLDLLAEQGS ISLEEAAAAK QRPLGVTTRG SMADSSFPAF LDLVKRQLRE DYREQDLTEE GLRIFTSFDP ILQLKAEEAL AETLKRLAGR KGVDEVQAGM VVTNPETGEV QALIGSRQPR FAGFNRALDA VRPIGSLIKP AIYLAALERP SQYTLTSWLE DEPFSIKGQD GQVWTPQNFD RKAHGTIYLY QGLAQSYNLS TAKLGLEIGV PNVLKTLERL GVERKWPAYP SMLLGAGALT PMEVADMYQT LANGGFNTPL RGIRSVLTAD GEPLGRYPFQ IQQRFDPGAI YLVQNAMQRT MREGTGRSVY NQLPSSLNLA GKTGTSNDSR DSWFAGFSQD LLAVVWLGRD DNGPTPLTGA TGALQVWAGF MRKADPLPLD MPMPDNVAQA WVDRQTGLGS ASGCPNAVQM PYIRGSEPAP GSACGFQAPV ESVMDWVRGW LD
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