Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0977 |
Symbol | |
ID | 5108599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1101725 |
End bp | 1103698 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640502194 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001186477 |
Protein GI | 146306012 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.411883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0692156 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGC GCAGACGACT GTTCTCGCTA TTCGCCCCGC TACTGCTCCT GACCCTGCTG CTCGTTCAGC TGCTGTCCAA CCAGTTGCTG CTGAGCCGCT TCGACCAGCA AGACAAGCAG CGCCTCCAGG AAACGGCGCA CAGGGCTCAC CTGATCCTGC TCGGCCATAT CGAACGCACC ACCGGCCTGC TGCACAGCTA TGCCTGGTGG GACCCCAGCT ACGAGCTGGC TCAGGGCCGC GGCGACTCCA GCCTCTACCT GCGGCAGAAT CTCGACAGCC TGCAGCTGGC CAACTACGAC TTCGACTTCA TGGCGCTGTT CGACGATGCC GGCAAACTGG TGCTGGAACA GTGGGCGCCG CCCGACCTGG CGGACCTGCT GCCGGTCGGC CACGACCGGC CACGCAGCAT TGCCAGCCTG CGCAGCGATA TCTACAGCCG CAGCCAGCGC CTGAATCTGC TTCGGCACCA AAGCGATGCG CAGTTCAGAA CCGGCCAGGT GCTGCTGATC CAAGGCGTGC CCGTGCTGCT GGTCAGCAGC GCCGTGAGCA ACAGCCAGGG CACCGCCAGC GCTGTCGGCA CCCTGCTGGC CGGCCGCTTT CTCGACGGGC AGCGCCTGCA TGCGCTGGAC CGGCAATTGC CCGGCAGCAG CCTGCGCCTG CTTCCCGCGG GCGTCGACCC GAAGGGCTGG CAGCCGCTGC CGGAGCGCCA GACATTCACC GCCGAGCTTG GCCCACGCAG GCTGCTGGAC GAGCAGCAGC AACAGATCGA GCTGCTGCTC AACAACAGCG ACGATGAGCC AGAGCTGCGT CTGCAGCTGA CCTCTCAGCG CATCAACTAC CACAAGGGCA AGGAGGCCAT CGAGTTCTTC CTCAGCGTCA GCTTCCTCAT CGCCCTGGCT GCCGCCGGCC TGGTCTATCT CGGCCTGGAA TACTGGGTCC TGCACCGTCT GGAACGCCTC AACCGGGAAA TCGGCGGTAT CGGGCAGCAG GCTCGCCTGC CTCGGGTGAG CAGCCTGGGC AATGACGAAC TGGGCGAGCT GGCCTCCGCG CTGAACCAGA TGCTCGAACG TCTCGACCAG AGCGAGGAGC GCGACCGGGC GATCCTCGAG TCGATCCAGG ACGGCTACTT CGAGGTGGAC GCAGAGGGAC GCTTCACCCG GGTCAATCGC GGCATGGAAC TGTCCCTCGG CTATCGCAGC GAGGAGCTGC TGAACATGCC CTTCACCCAG CTGCTGCTGA CGGAGAAGGT CGAACAGGCC GAGACCACCT TCCAGCAGGC GCAGCAGGAC AGCAGTCTCA GCGGCTTCAA CCTGCAGCTG CGTCGTGCCG ATGGCAGCCT GGGCGACTTC GAGGGGCGAC TGTCGCAGAT CCATACCCAG GACGGGACCT TCGTCGGCTA TCGCGGCATC CTGCGCGACA TTTCCGAGCG CGCCGCGCAC CAGCGTCATC TGCATGACCT CGCCTATCGC GACCCGCTGA CCAGCCTGGG CAACCGCAAG GCCTTTCACG AGCAGTTGCA GGGGGATCTG CAGCAGACCC TGAACGAAGG CAGCGTACTG GCGCTGTTCT TCATCGACCT GGACCACTTC AAGCAGGTCA ACGACCAGTA TGGCCACGAC GCCGGCGATG CCCTGCTCTG CGCCATCGCC GCCAGGCTGC AGCATGGCCT GCGGCAACCC GGCAAGCTCT ACCGCCTGGG GGGCGACGAA TTCACCCTGC TCATGCCACA GGCCACCGCC GAAGCGGCCC GGGCGCTGGG CGAGCGCCTG CTCGGCAGCC TTGGTGCGCC GTTCGAGATC GCCGGACACA GCATCGATTT TGTCACGCCC AGTGTCGGCA TCGCCCTCTG CCCGCAGCAC GCCACGGCCA GCGAGGCGCT GATCAAGGCC GCCGACAGCG CCATGTACCA GGCCAAACGC AAGCGCAATC AGGTCGTGAT CTTCGAGCCG TCGGCCGCTG CCGAAACACA CTGA
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Protein sequence | MTLRRRLFSL FAPLLLLTLL LVQLLSNQLL LSRFDQQDKQ RLQETAHRAH LILLGHIERT TGLLHSYAWW DPSYELAQGR GDSSLYLRQN LDSLQLANYD FDFMALFDDA GKLVLEQWAP PDLADLLPVG HDRPRSIASL RSDIYSRSQR LNLLRHQSDA QFRTGQVLLI QGVPVLLVSS AVSNSQGTAS AVGTLLAGRF LDGQRLHALD RQLPGSSLRL LPAGVDPKGW QPLPERQTFT AELGPRRLLD EQQQQIELLL NNSDDEPELR LQLTSQRINY HKGKEAIEFF LSVSFLIALA AAGLVYLGLE YWVLHRLERL NREIGGIGQQ ARLPRVSSLG NDELGELASA LNQMLERLDQ SEERDRAILE SIQDGYFEVD AEGRFTRVNR GMELSLGYRS EELLNMPFTQ LLLTEKVEQA ETTFQQAQQD SSLSGFNLQL RRADGSLGDF EGRLSQIHTQ DGTFVGYRGI LRDISERAAH QRHLHDLAYR DPLTSLGNRK AFHEQLQGDL QQTLNEGSVL ALFFIDLDHF KQVNDQYGHD AGDALLCAIA ARLQHGLRQP GKLYRLGGDE FTLLMPQATA EAARALGERL LGSLGAPFEI AGHSIDFVTP SVGIALCPQH ATASEALIKA ADSAMYQAKR KRNQVVIFEP SAAAETH
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