| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0936 |
|---|
| Symbol | |
|---|
| ID | 5108794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1057867 |
|---|
| End bp | 1059882 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640502153 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001186436 |
|---|
| Protein GI | 146305971 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.156465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTGC GTCAGCGCCT CGACAACCTG CCGGTCGGCC GCAAACTGCT CGCCGCCCTG
CTGGTGCTGC TCGCCGCGGT ACTGCTGATC GCCAACCTGG CCTTTATCAG CGCGGCCTAC
TGGATCACCC AGGAGAGCAT GGCGCCCCAG GCCCTGCACA CCCTCGGCCG ACTGATCGCC
AGCCCCACCC TGAGCAAGGA GGCGCTGCAC TCGCCGGCCT CGGCCGAAGC CCTGCTCAAG
CGCCTGGACG ATTACGCGCC GCTGCGTGCG GCGGTGATCT ACGACAGCAA CGGCGTCAGC
CTGGCGCAGT TGCAGCGCGG CGAGAAACTG CAGCTACCGC AACAGCTGAG CCAGCTGCAG
CACTGGCGCG AAACCGCCTT TCGCACCAAT TTGCTGGTGG AGCTGCCGCA CCCCAGTGGC
CGCCCCGGCG CCCTGCTGCT GGTGGCTTCC AGCGAGCTGC CTGGGGTGTT CTACACCGGC
ACGCTGAGTG CTAGCCTGGC GATTCTGGCC CTCAGCGTGC TGCTCTGGCT GCTGGTGGCC
AGGCAGATCA AGCGCCTGGT GACCAAGCCG ATCCGCCGCC TGGAGGAACT GTCGCGCCAG
GTCACCCGCG AGGAGAACTA TGCGCTGCGC GCCACCCGCG GCAACCAGGA CGAGATCGGC
AGCCTCGCCG ATGCCTTCAA CACCATGCTG ATGCGCATCG AGGCGCGCGA ACAGCAGCTC
AAGCGCGCCC GCGACGACGC CCAGCAGGCC TTCGATCAGG CCCAGAGCCT GGCCGAGGAA
ACCCGTCATT CCAACCGCAA GCTGGAACTG GAAGTGCAGG TGCGCAGCAA GATCGAGAAG
AAGCTCACCG GCTTTCAGAA CTACCTCAAC AGCATCATCG ATTCGATGCC CTCGGCGCTG
ATCGCCCTCG ACGAGCAGCT CTACGTCACC CAGTGGAATC AGGAGGCCAG CGCCCTGTCC
GGTACCCGCC TGGACGAGGC GCTGAACCAA CCGGTGTTTC TCGCCTTTCC GCCGCTCAAG
CCCTTCCTGC CGCAACTGCG GCGCACCGCC GAGCAGCACC GGGTGGAGAA GATCGAACGG
GTTACCTGGC ACAAGGACGA GGACCCGCGC CATTACGCCC TGACCTTCTA CCCGCTGATG
GGCGGCACCG GGCGTGGCGT GGTGATCCGC ATCGACGACA TCACCCAGCG CCTGGCCCTG
GAAGAGATGA TGGTGCAATC GGAAAAGATG CTTTCGGTCG GCGGACTGGC CGCGGGCATG
GCTCACGAGA TCAACAACCC GCTGGGCGCC ATCCTGCATA ACGTGCAGAA CATCCGCAGA
CGCCTGTCGC CGGAACTGGA GAAGAACCGC GAGCAGGCCG AGCAGGCCGG CGTCAGCCTG
GAGGCCATCG AGCAGTACAT GCAGGCGCGC GAGGTGCCAC GGCTGCTCGA CGGCATCCAG
CAGGCCGGCC AGCGTGCCGC CAAGATCGTC AGCCACATGC TCAGTTTCAG TCGCCGCAGC
GATCGTCAGC TGTCGCCCTG CGACCTGCCC GCCCTGATCG ACCAGGCGCT GGAGATCGCC
GGCAATGACT TCGATCTGAC CGACAGCTTC GACTTCAAGG CCCTGCAGAT CGTCCGCGAC
TTCGACCCGC AGCTGGGCCC GGTGGCCGCC ACCGCCAACG AACTGGAACA GGTGCTGCTC
AACCTGCTGA AGAACGCCGC CCAGGCCATC CACCAGCGCG ACGACGACGA ACCCGGCCGC
ATCACCCTGC GCACCCGCCA GGTCGGCGGC TGGGCCGAGG TGCAGGTGGA GGACAACGGC
ATCGGCATGA GCGAGGCAGT GCGCAAGCGC ATCTTCGAGC CCTTCTTCAC CACCAAGGAA
GTCGGCCAGG GCACCGGCCT CGGCCTGGCG GTTTCCTATT TCATCGTCAC CAACAACCAC
AAAGGGCAGA TGGAGGTGCA CTCCACCCCG GGCCAGGGCA CCTGTTTCAC CCTGCGCCTG
CCACTGGCCT CCACTGCCGA CAACACAGGA CTCTGA
|
|---|
| Protein sequence | MRLRQRLDNL PVGRKLLAAL LVLLAAVLLI ANLAFISAAY WITQESMAPQ ALHTLGRLIA
SPTLSKEALH SPASAEALLK RLDDYAPLRA AVIYDSNGVS LAQLQRGEKL QLPQQLSQLQ
HWRETAFRTN LLVELPHPSG RPGALLLVAS SELPGVFYTG TLSASLAILA LSVLLWLLVA
RQIKRLVTKP IRRLEELSRQ VTREENYALR ATRGNQDEIG SLADAFNTML MRIEAREQQL
KRARDDAQQA FDQAQSLAEE TRHSNRKLEL EVQVRSKIEK KLTGFQNYLN SIIDSMPSAL
IALDEQLYVT QWNQEASALS GTRLDEALNQ PVFLAFPPLK PFLPQLRRTA EQHRVEKIER
VTWHKDEDPR HYALTFYPLM GGTGRGVVIR IDDITQRLAL EEMMVQSEKM LSVGGLAAGM
AHEINNPLGA ILHNVQNIRR RLSPELEKNR EQAEQAGVSL EAIEQYMQAR EVPRLLDGIQ
QAGQRAAKIV SHMLSFSRRS DRQLSPCDLP ALIDQALEIA GNDFDLTDSF DFKALQIVRD
FDPQLGPVAA TANELEQVLL NLLKNAAQAI HQRDDDEPGR ITLRTRQVGG WAEVQVEDNG
IGMSEAVRKR IFEPFFTTKE VGQGTGLGLA VSYFIVTNNH KGQMEVHSTP GQGTCFTLRL
PLASTADNTG L
|
|---|
| |