Gene Pmen_0928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0928 
SymbollpxC 
ID5108786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1048684 
End bp1049595 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content59% 
IMG OID640502145 
ProductUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 
Protein accessionYP_001186428 
Protein GI146305963 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase 
TIGRFAM ID[TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.000124544 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.943478 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGAC AACGCACCCT GAAGAACATC ATCCGTGCCA CCGGCGTTGG CCTGCATTCG 
GGGGAAAAGG TTTACCTGAC CCTGAAGCCG GCTCCGGTGG ATACCGGCAT CGTGTTCCGT
CGCACCGACC TCGACCCCAT CGTGGAAATT CGCGCATTGG CCGGGAATGT CGGTGAAACC
ACCATGTCGA CCACTCTGGT CAATGGTGAT GTCAAGGTGG ATACGGTAGA GCACCTGCTT
TCGGCCATGG CAGGCCTGGG CATCGATAAC GCCTACGTCG AGCTCTCCGC GTCCGAAGTG
CCGATCATGG ATGGCAGCGC CGGCCCCTTC GTATTCCTGA TTCAATCCGC TGGCCTGCAG
GAGCAGGAAG CGCCGAAGAA GTTCATCCGC ATCCTGCGTG AGGTCACGGT GGTGGAGGGC
GACAAGCGCG CCACCTTCGT GCCCTTCGAC GGATTCAAGG TGAGCTTCGA GATCGACTTC
GATCACCCCG TGTTCCGCAA TCGCACGCAG AGCGCCAGTG TGGATTTCTC GAGCACGTCT
TTCGTCAAGG AAGTCAGCCG GGCCCGCACC TTCGGTTTCA TGCGTGACAT CGAGTTCCTG
CGTTCGCAGA ACCTGGCGCT CGGTGGCAGT GTGGAAAACG CCATCGTGGT CGACGAGTAT
CGCGTGCTCA ACGAAGACGG CCTGCGTTAC GAGGACGAAT TCGTCAAACA TAAGATTCTC
GATGCAATCG GCGATCTGTA CCTGTTGGGT AACAGCCTGA TCGGCGAGTT CAAGGGCTTC
AAGTCGGGGC ATGCGCTGAA CAATCGCCTG CTGCGCACCC TGATCGAGCA GACCGATGCC
TGGGAAATGG TGACCTTCGA GGACGCCAAG CTCGCGCCGA TCTCCTACAT GCGCCCGGTA
GCGGCCGTGT AG
 
Protein sequence
MIRQRTLKNI IRATGVGLHS GEKVYLTLKP APVDTGIVFR RTDLDPIVEI RALAGNVGET 
TMSTTLVNGD VKVDTVEHLL SAMAGLGIDN AYVELSASEV PIMDGSAGPF VFLIQSAGLQ
EQEAPKKFIR ILREVTVVEG DKRATFVPFD GFKVSFEIDF DHPVFRNRTQ SASVDFSSTS
FVKEVSRART FGFMRDIEFL RSQNLALGGS VENAIVVDEY RVLNEDGLRY EDEFVKHKIL
DAIGDLYLLG NSLIGEFKGF KSGHALNNRL LRTLIEQTDA WEMVTFEDAK LAPISYMRPV
AAV