Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0861 |
Symbol | |
ID | 5108955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 980793 |
End bp | 984614 |
Gene Length | 3822 bp |
Protein Length | 1273 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640502077 |
Product | membrane protein-like protein |
Protein accession | YP_001186361 |
Protein GI | 146305896 |
COG category | [S] Function unknown |
COG ID | [COG3164] Predicted membrane protein |
TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.835961 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGTGGTC TGGGGCGTCT GTTCCTGCAG CTGCTGCGCT GGGGGCTCGG TCTGTGCGCC GCGCTGCTGG TGTTGGCGGC GCTGTATGTC AGCCTGGGTC GCGAGCTGGT GCCGCTGGTG GCCGAGTACC GCCTGGAGGC GGAGGACCAT GCCAGTGAGG CGTTGGGCGT ACCGGTGCGC ATCGGTCGGC TGGAGGGGCG CTGGCAGGGC TTCGCGCCGG TGCTGGTGGC CCACGACGTG CAGATCGGTG CGCAGGATCA GGGGCTCGGC CTGGATCGCG TGCAGCTGCT GCCGGATATG CTCGGCAGCC TGCTGGCGCG GCAACCGCGC ATCGCTCATC TGCAGTTCGA TGGCCTGCAG CTGAACCTGC AGGAAGACGC CGAGGGTGCC TGGCACCTGC AGGGCTGGCC AGAGCGTGAC GGCCCCGACG CGGATGTCCA GCAGGTGCTG GAACAGTTGC GGATAGTGCG GCGCATCAGC CTGTTCGACA GCCGTATCGT CCTGCAGCCG CGCGACCAGG AGCCGCTGCT GCTCAGCTAC GTCAACCTCA GCCTGGGCTA TGGCCGCAAC AGCCAGCGCC TGGATGGCCG CCTGCTGCTG CCCGATGGTC AGCCGCTGGC CTTGCGCCTG CGCACGCGGA TGCAGCCGCA GAGCTGGCGC GAGGCCGAAG CCGAGCTGTA CCTGAGCCTG CCGCAGAGCG ACTGGGCGGC CTGGCTGCCG CAGCGCCTGA CCGGCGACTG GCACCTTGAA CGCCTGCAGG CCGGCGGCGA ACTCTGGCTC AAGGCGCGCG GGCTGGCCCT GCAGCAGGGT GCCCTGCGCC TGCACGCACC GCAGGTGGTC GGCGCGCATG GCGAGCAGGA GCCGATCACG CTGGACGACC TGGCCTTCAA TGCCTACTTC CGTCAGGAGG CAGGCGGCGT GCACGCGCAG CTCGATTCCC TGGCCATGAC CCATGGCGAG CAGCGCATTG GCGAAGTGCA TCTGAACCTG GCGCAGCACG GCGCCGGCAG CGCGGAAGAG CGCTGGGCGC TGAGCGCCGA CCGCCTCGAT CTGGCGGCTT GGGCGCCCCT GGTGCACGCC CTGGTGCCCA TGCCGGAGGC CGCCGAGCAG GCGCTGGTCG GCCTGGCGCC GCAGGGCAGC GTCAGCAATC TGCTGCTGGA CTACTTCCCG CAAGCAGAAG GCGCCGAGCG TCTGCGCTTC GCCGCCAACC TCGAGCGCGT GGGCATCGCC GCCTACCACG GCGCGCCGGC GGCAGAGAAC GTCAGCGGCA GTGCGTCGGG CAATCTGTTC CAGGGCGAGT TGCGCCTGAA CAGCGAGAAC TTCGCCCTGC ATCTGGATCA GCTGTTCCCC GAGCCCTGGC GCTACCGTCA TGCCCAGGCG CGCCTGAGCT GGGCGTGGAA TGACGACGGC CTGACCCTGG CCAGCCCCTA CATGCGCCTG GATGGCGAGG AAGGGCAGAT CGCCGGAGAC ATGCTGATTC GCCTGCGTCG CGATCCCGAT GCCGAGGACT ACATGGACCT GCGCGTCGGC CTGCGTGACG GCGATGCGGC CTACACCGAG AAGTACCTGC CGAGCCGTTC ACCGGGCATG AGCGCCGAGC TGGACAAGTG GCTGAAGACT GCCATTCGCT CTGGCCGGGT CGAGGAAGGC TATTTCCAGT ATCAGGGATC GCTGAACAAG GGCGCTTCGC TGGGGGCGCG CAGCCTCAGC CTGTTCTTCC AGGTCAAGGA TGCCGAACTG GCCTTCCAGC CGGACTGGCC GTCGCTGCGC GAAGGCAACG GCGAGGTGCT GATCGAGGAC GACGCGGTAC GCGTGCGCCT GCAGAGCGGG CGTCTGCTGG ACAGCCGGGT CAGCGAGGTG ACCGCCAACA TTCCCCTGCT GCATGACGGC AAGCCGCCGC GCCTGAAGCT CGACGGCAAG GTGCAGAGCA GCCTGGGCGA TGCCATCAAG CTGCTGCGCG AAGCCCCCAT CGGCACCGCC GAGATCGTTG CCGGCTGGCA GGGTGAAGGG CCATTGAGCG GACGCCTGCA GCTGGATGTC CCTTTGCAGA AAGGGCCGAA GCCGGGCGTG ATAGTGGACT TCGCCACCGA GGGCGCCAGC CTCAAGCTGA GCAACCCGGA TCTGCAATTG AGCCAGGTGC AGGGCGCGTT TCGCTTCGAC AGCGCATCGG GGCTCAGTGC TCCGGACGTG CGGGCGCAGG TGTTCGGGCG TCAGGTGCGC GGCAAGATCA GCGCCGAAGG CTCGCGCGGC CAGGCGCGCA CGCTCTTCGA TCTGCGCGGC CAGGTGCAGG TGGAAACGCT CAGTCAGTGG CTGGGTGGTC CGCAGAAGCT TCCGGTTGGC GGGCTGCTGC CCTATCGCCT GCGGCTGACC CTCGACGGAG ACGACAGTCA GCTGCGTGTC GACTCGAATC TGCGCGGCGT GGCCATCGAT CTGCCCGCGC CCTTCGGCAA GACGGCCGAG CAGGAGCGCC ATGCCGAGTG GCGCATGACC CTGAGCGGAC GCGAGCGGCG CTACTGGGCC GACTACGAGG GGGTGGCCAG TCTCAATCTG GCGGCGCCGG CAGGGGCTCT GGCCGACGGG CGCGGTGAAC TGGTAGTGGG CGGCGAGCCG GCTCGGCTGC CCACTGCGCA GGGGCTGAGG GTGCGTGGCA CGCTGGCGGA GCTGGACCTC GAGGCCTGGA AGCAGCTGTC CGTGGATCAC CCGGTCAAGG TGGACGACGA CAGCCAGCGT CTGTTCCGTG GGGGGCAGCT GAATATCGGG CGTTTCCGCG GGTTTGGTCA GGAGGTCGAG CAGCTGCGCA TCGGCCTGAC GCGACAGGGG CAGGCCTGGG AACTGCAGCT CAACAGCGAG CTGGCGGCCG GGCGGGTGCT GCGCGCCGAT GCCGAGGGTG TGCCTATCCG CATCGATCTG CAGCATGTCA GGCTGCCGGC ACCTGATCCT GAGGCTGCGA AGGCCAGCGA TGCGCCCGAT CCGCTGGCGG ACGTCGACCC CCGGCAGATT CCGGCGCTGG ACATCCGTAT CGAGCGCGTG CAGCGCGGCG ACAAGGTGCT GGGTGCCTGG TCGCTGAAGG TGCGCCCGGA AGAACAGGGG GTGCGCTTCG ACGAACTCGA TCTCGACCTG CAGGGGCTGA AGATCGGCGG CAGCGCAGGC TGGCGCGGCG CGCCGGGCGC CACGCGCAGC TGGTACAAGG GACGCATGCA GGGCGGGGAC CTGGGCAAGG TACTGCTGGC CTGGGACTTC GCCCCCAGCG CCACCAGCGA AAGTTTTCGT GTCGACATCG ACGGCAGCTG GCCGGGCTCG CTGGCCTGGT TCTCGCTCAA GCGTTTTTCC GGCACCTTCG AACCCTCCCT GCGCAAGGGA CAGTTCGTCG AAGTGCAGGG CTCGGCGCAG GCATTGCGGG TATTCGGCCT GCTCAACTTC GACTCCATCG GTCGCCGCCT GCGCCTGGAC TTCTCGGACC TGCTCGGCAA GGGCCTGAGC TATGACCGGG TCAAGGGCAA CCTGCAGGCC AACGACGGTC TGTTCGTTAC CCGCGAACCG ATCACCCTGA CCGGGCCGTC GAGCAACCTC GAACTCAAGG GCAACCTGGA CATGCGCAAC GAGCGTATCG ACGCCAAGCT GCTGGTGACC CTGCCGGTGA CCAATAACCT GCCGCTGGCC GCGCTGATCG TCGGGGCGCC GGCCGTCGGC GGTGCGCTGT TCGTGGTCGA CAAGCTGCTG GGAGACAGGG TCGCGCGCTT CGCCAGCGTG CAGTACGACG TCAAGGGGCC ACTGCAGGAT CCGGAAATCA GCTTCGACAA GCCGTTCGAA AAACCGCAAT GA
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Protein sequence | MGGLGRLFLQ LLRWGLGLCA ALLVLAALYV SLGRELVPLV AEYRLEAEDH ASEALGVPVR IGRLEGRWQG FAPVLVAHDV QIGAQDQGLG LDRVQLLPDM LGSLLARQPR IAHLQFDGLQ LNLQEDAEGA WHLQGWPERD GPDADVQQVL EQLRIVRRIS LFDSRIVLQP RDQEPLLLSY VNLSLGYGRN SQRLDGRLLL PDGQPLALRL RTRMQPQSWR EAEAELYLSL PQSDWAAWLP QRLTGDWHLE RLQAGGELWL KARGLALQQG ALRLHAPQVV GAHGEQEPIT LDDLAFNAYF RQEAGGVHAQ LDSLAMTHGE QRIGEVHLNL AQHGAGSAEE RWALSADRLD LAAWAPLVHA LVPMPEAAEQ ALVGLAPQGS VSNLLLDYFP QAEGAERLRF AANLERVGIA AYHGAPAAEN VSGSASGNLF QGELRLNSEN FALHLDQLFP EPWRYRHAQA RLSWAWNDDG LTLASPYMRL DGEEGQIAGD MLIRLRRDPD AEDYMDLRVG LRDGDAAYTE KYLPSRSPGM SAELDKWLKT AIRSGRVEEG YFQYQGSLNK GASLGARSLS LFFQVKDAEL AFQPDWPSLR EGNGEVLIED DAVRVRLQSG RLLDSRVSEV TANIPLLHDG KPPRLKLDGK VQSSLGDAIK LLREAPIGTA EIVAGWQGEG PLSGRLQLDV PLQKGPKPGV IVDFATEGAS LKLSNPDLQL SQVQGAFRFD SASGLSAPDV RAQVFGRQVR GKISAEGSRG QARTLFDLRG QVQVETLSQW LGGPQKLPVG GLLPYRLRLT LDGDDSQLRV DSNLRGVAID LPAPFGKTAE QERHAEWRMT LSGRERRYWA DYEGVASLNL AAPAGALADG RGELVVGGEP ARLPTAQGLR VRGTLAELDL EAWKQLSVDH PVKVDDDSQR LFRGGQLNIG RFRGFGQEVE QLRIGLTRQG QAWELQLNSE LAAGRVLRAD AEGVPIRIDL QHVRLPAPDP EAAKASDAPD PLADVDPRQI PALDIRIERV QRGDKVLGAW SLKVRPEEQG VRFDELDLDL QGLKIGGSAG WRGAPGATRS WYKGRMQGGD LGKVLLAWDF APSATSESFR VDIDGSWPGS LAWFSLKRFS GTFEPSLRKG QFVEVQGSAQ ALRVFGLLNF DSIGRRLRLD FSDLLGKGLS YDRVKGNLQA NDGLFVTREP ITLTGPSSNL ELKGNLDMRN ERIDAKLLVT LPVTNNLPLA ALIVGAPAVG GALFVVDKLL GDRVARFASV QYDVKGPLQD PEISFDKPFE KPQ
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