| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0760 |
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| Symbol | |
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| ID | 5108854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 853831 |
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| End bp | 858045 |
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| Gene Length | 4215 bp |
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| Protein Length | 1404 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640501973 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001186260 |
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| Protein GI | 146305795 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.231921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGACTC CCTCCTCCCA GCCGTCGAGC CCCTCGGGCG AGTCGCGCGC GCCACGGCGC
GAAGCGCTGC GGCGCGTGCT GATGGCACTG GTGCTGGCGA TGCTGGGACT GCTGGCCTGG
CAGCTGACGC AGGAATACCG CCAGCTGCTG GACAGCCAGA AGCAACTGAG CCGCGGCTAC
AGCGAACAGC TGGCCAAACA CCTGAGCCTG AACATGCGCC TCAAGGCCCA GGCCGGCCAG
GCCATGCTAC AAGCGGCCGA AACGCGCGGT GATGTGACCG CGCCGATCGC CCCCCTGCGC
AGCATCTTCC CGACACTGCA GAGCATCGTC TGGCTGGATG CTCAAGGTCA GCGGTTGGCC
GACAGCGCCG GCGAATCGCC GGACCTGCCT TTCATCCGCG CGCTGCAGCA GCGCATTGGC
GCAGCGGACT ATCACTTCGC CTTCAGCCCC CAGGACGAGG GTGCCCTCTA TCTCCTTCTG
CGCCAGGACG ACGAGAGCCA GCGTGTGCTG CGCCTGCGCA TGACCGCTCT GCGCGACTGG
CTTCGCGAGC AGCACCACAG CGAGCACGAC TGGCTGCTCG AAGACCTGCA GAGCCGGCGG
GTGATGGCCC GCGCCGACGA TCTGCGCCAG CCCGGCCAGG TCATCGCACC GGTTACCGCG
GTCGAACAGG CGCAGAGCCT GGAACTGATT GCCCTGCCCG GCAGCGACTG GCAGTTGCGT
GCGCTGTTCG ACGCCGATCG CGCCGGCAAC GAACTGATGC CGACCCTGGC CGGCAAGTTC
CTGCTGTTCA CCCTGTGCAG CCTGCTAACC CTGCTCGCCC TTTATGGCCT GCAGCGGGAA
CAGCGCCGCC TGCAGCGGCT CAATACCGAA TCGCGGCGCT CGCTGCGCCA GGCCGCCAGC
GCGCTTGCCG CGGTCGAGGA GCGCATCCTG GTGACCCAGG CCAACGGCAA GCTGCGCTAC
CTCAACCCTC AGGCCGAGGC CCTGTTCGGC CTGAGCAGCG AAGCGGCCTG GGACCGCCAT
CTGCTGGATC TGCTGCCCGA CCTCGACCCG CTGCTGCTCA ACAGTCCGCA AGCGCCCAGC
GACCTGGGCC CGGAGCTGGT AAGGGTGGAG CAGCAAGGCC GCGGCCGCCT GTTCGCGGTG
ACCCGCAGCG ACATCAGCGA ACTCGGTCGG CAGGCCGGCT ACGTCTGGGT GCTGCGAGAT
GTGACCGACG AGCAGCAGGC GATGCGCGTG CTGCAGGAGA CGCGCCGGCG CTATCAGGAC
ATCTTCGAGG GCACCGGGGT CGCCTTGTGC GTGCTCGACC TGGCGGGACT GCGCAGCTTC
CTGCTGCAGC AGAAACTGCG CGACGCCGCC GGTCTGAGCC GCTGGTTGCA GGCCGATGCC
CGCCATCACC AGGCGCTTCT GGACCAGTTG CACATCACCG AAGCCAACCA GGTGGCGCTC
AATCTGCTGG GCGTGAAATC CACCGAACAG GCCTGGCAGC AACTGTTCGA CAACGGCCCG
CTGCAGCCGG ATGACCTGCG CTACCGGCTC GCCGTGGCGG TGCTGGAAGG CCCCAACCTG
GTCGAGCTGG AAACCCAGCT GGTCACCGCC CAGGGCCTGC AGCGCCATGT CTGGCTGGTG
CTGCGCCTGC CGGAGATGAT CCAGGACTAC CAGGCGGTGA CCCTCAGCAT CAGCGACATC
ACCAGCCGCA AGCGCATCGA GCTGTCGCTG ATCGAGCGCG AGCGCTTCTG GTCCGAGGTG
GTGCGCTCGG TACCCGATCT GCTCTACGTG CACGACATGC AGAACAAGCG GGTGCTGTTC
AGCAACCACA GCCTCGGCCT GCAGCTGGGT TACAGCAAGA CCGAACTCAA GGCCATGGAG
GGGGACTTCT GGGAGCGCGT GCTGCACCCG GACGACAGCG ACTACTACTG GCGCATCCGC
AACCTGCAGA AGGTGGTCGG CGACGGCCTG CTGCTCGAAT CGGTCCTGCG CTGGCGCCAT
CGCGACGGCC AGTGGCGCTG GTTCAGCATC CGCGAGCAGG CCCTGGCGCG GGACGAGCGA
GGCCGGGTCA GCCGCCTGAT CGGCGTGGCC AAGGACATCA CCGAGCAGAT CGAACGCAAC
CAGTCGCTGC GCGACAGCGA GCAGCGCTAC CGCCTGCTGG CCGAGAGCAT CAGCGACGTG
ATCTTCTCCA CCGACAGCGC GCTTCATCTC AACTACGTCA GCCCCTCGGT GGAACCGGTG
CTGGGCTACT CCGTGGACTG GGTCATGGCC AACAGCTTCT ACAGCCTGGC GGCCAATCCG
CAGCAACTGA ACGGCCTCAA CCTGCTGCTC GAACGCATTC GCGACTCGCT CGGCGAACGT
GACCGCCTCG AGCGTCTGCG CGAGGAGCTG CCGGATCAGC TGTTCGTCTT CGATTGCCTG
CGCGCCGACG GCCACAAGAT TCCGGTGGAG CTGCGCCTGG TGCTGATGTG GGACGAGAAC
GGACGCTTCG AGGGCATCCT CGGGGTCGGC CGCGACATCA GCCAGCAGCG CCGTGCGGAG
AAGGATCTGC GCATGGCCGC GACGGTGTTC GAACACTCCA CCGCGGCCAT TCTGGTCACC
GACCCGGCCG GCTACATCGT CCAGGTCAAC AAGGCCTTCA GCCGGGTCAG CGGCTATTCG
GCCGGCCAGG TGCTCGACCA GTTGCCCGGC ATGCTCACCG CCGACCGCCA GCAGGCGGCG
CACCTGCAGT ACATCCTCAG CCAGCTCAAT CAGCGCGGCA GCTGGGAGGG CGAGGTGTGG
CTCAAGCGCA AGGGCGGCGA GAACTTCCCG GCCTGGGTCG GCATCACCGC GGTGCACGAC
GAGGAAGGCG ACCTGGTCAG CTACGTGTGC TTCTTCAGCG ACATCAGCGA ACGCAAGGCC
AGCGAGCAGC GCATCCATCG CCTGGCCTAC TACGATGCCC TGACCCACCT GCCCAACCGC
ACCCTGTTCC AGGACCGTCT GCACAGCGCC CTGCAGCACG CCGAGCGGCA CAACGAGTGG
GTGGTGCTGA TGTTCCTCGA TCTCGACCGC TTCAAGCCAA TCAACGATTC GCTCGGCCAT
GCCGCCGGCG ATCGCATGCT CAAGGACGTG GCCGTGCGCC TGTCGGCCTG CGTCGATGGC
GACGATACCG TGGCGCGCAT GGGCGGCGAT GAATTCACCC TGCTGCTGCA GCCGCGCGCC
ACCCGCGAGG GTGCGCTGAA CCGGGCGATC CACGTCGCCG AGCAGATTCT CGACAGCCTG
GCCCGCCCCT TCGTGCTCGA AGGGCGCGAG TTCTTCGTCA CCGCCAGCAT CGGCATCGCC
CTCGCCCCGC AGGACGGCGA CGAGCTCAGC CAGTTGATGA AGAACGCCGA TACCGCCATG
TATCACGCCA AGGAACGCGG CAAGAACAAC TTCCAGTTCT ACCAGGCCGA CATGAACGCC
AGCGCGCTGG AGCGCCTGGA GCTGGAAAGC GACCTGCGCC ACGCCCAGGA ACAGGGCCAG
TTCGTGCTGC ATTACCAGCC GCAGTTCTCC GGCGACGGCC GCCGTCTCAC CGGGGTCGAG
GCGCTGCTGC GCTGGAATCA CCCGGGCCGC GGCCTGGTAC CGCCCACCGA TTTCATCCCG
GTGCTGGAAG AACTCGGACT GGTGGTTCAG GTCGGCGAGT GGGTGCTGGA GGAAGCCTGC
CGCCAGCTCA AGGCCTGGCA CGACGAGAAG ATCCGCATTC CCAAGATCTC GGTCAACCTG
TCCGCCCGCC AGTTCGCCGA AGGCGACCTG AGCGCGCGCA TCGCGGCCAT TCTGGAGCGA
ACCGGGGTGG CCCCGGCCTG CCTCGAGGTG GAACTGACCG AGAGCATTCT GATGCGCGAT
GTGGCCAGCG CCATGCAGAC CCTGGGCGAG CTCAAACGCC TGGGCCTGTG CATCGCGGTG
GACGATTTCG GCACCGGTTA CTCCTCGCTG AACTACCTCA AGCAGTTCCC CATCGACGTG
TTGAAGATCG ACCGCAGCTT CGTCGACGGC CTGCCGGACG GCGAGCAGGA CGCGCAGATC
GCCCGCGCCA TCATCGCCAT GGCGCACAGC CTGAACATGA TGGTGATCGC CGAAGGCGTG
GAAAGCCATG CCCAGCTGGA GTTCCTGCGC GAGCACGGCT GTGACGAGGT ACAGGGCTAC
CTGCTCGGCC GGCCGATGCA GCCGCGCCAG TTCAGCGCCC AGTTCGGCGG CGCGGCGCTG
TTCATGTTCA GCTGA
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| Protein sequence | MSTPSSQPSS PSGESRAPRR EALRRVLMAL VLAMLGLLAW QLTQEYRQLL DSQKQLSRGY
SEQLAKHLSL NMRLKAQAGQ AMLQAAETRG DVTAPIAPLR SIFPTLQSIV WLDAQGQRLA
DSAGESPDLP FIRALQQRIG AADYHFAFSP QDEGALYLLL RQDDESQRVL RLRMTALRDW
LREQHHSEHD WLLEDLQSRR VMARADDLRQ PGQVIAPVTA VEQAQSLELI ALPGSDWQLR
ALFDADRAGN ELMPTLAGKF LLFTLCSLLT LLALYGLQRE QRRLQRLNTE SRRSLRQAAS
ALAAVEERIL VTQANGKLRY LNPQAEALFG LSSEAAWDRH LLDLLPDLDP LLLNSPQAPS
DLGPELVRVE QQGRGRLFAV TRSDISELGR QAGYVWVLRD VTDEQQAMRV LQETRRRYQD
IFEGTGVALC VLDLAGLRSF LLQQKLRDAA GLSRWLQADA RHHQALLDQL HITEANQVAL
NLLGVKSTEQ AWQQLFDNGP LQPDDLRYRL AVAVLEGPNL VELETQLVTA QGLQRHVWLV
LRLPEMIQDY QAVTLSISDI TSRKRIELSL IERERFWSEV VRSVPDLLYV HDMQNKRVLF
SNHSLGLQLG YSKTELKAME GDFWERVLHP DDSDYYWRIR NLQKVVGDGL LLESVLRWRH
RDGQWRWFSI REQALARDER GRVSRLIGVA KDITEQIERN QSLRDSEQRY RLLAESISDV
IFSTDSALHL NYVSPSVEPV LGYSVDWVMA NSFYSLAANP QQLNGLNLLL ERIRDSLGER
DRLERLREEL PDQLFVFDCL RADGHKIPVE LRLVLMWDEN GRFEGILGVG RDISQQRRAE
KDLRMAATVF EHSTAAILVT DPAGYIVQVN KAFSRVSGYS AGQVLDQLPG MLTADRQQAA
HLQYILSQLN QRGSWEGEVW LKRKGGENFP AWVGITAVHD EEGDLVSYVC FFSDISERKA
SEQRIHRLAY YDALTHLPNR TLFQDRLHSA LQHAERHNEW VVLMFLDLDR FKPINDSLGH
AAGDRMLKDV AVRLSACVDG DDTVARMGGD EFTLLLQPRA TREGALNRAI HVAEQILDSL
ARPFVLEGRE FFVTASIGIA LAPQDGDELS QLMKNADTAM YHAKERGKNN FQFYQADMNA
SALERLELES DLRHAQEQGQ FVLHYQPQFS GDGRRLTGVE ALLRWNHPGR GLVPPTDFIP
VLEELGLVVQ VGEWVLEEAC RQLKAWHDEK IRIPKISVNL SARQFAEGDL SARIAAILER
TGVAPACLEV ELTESILMRD VASAMQTLGE LKRLGLCIAV DDFGTGYSSL NYLKQFPIDV
LKIDRSFVDG LPDGEQDAQI ARAIIAMAHS LNMMVIAEGV ESHAQLEFLR EHGCDEVQGY
LLGRPMQPRQ FSAQFGGAAL FMFS
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