| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0710 |
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| Symbol | |
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| ID | 5109040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 788344 |
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| End bp | 789342 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501923 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001186210 |
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| Protein GI | 146305745 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCCC CACGTATTGG CCCTTACACA TTGCCCAATC GGTTGATCCT GGCCCCCATG
GCCGGCGTCA CCGATCGCCC GTTCCGCCAG CTGTGCCGCC GCCTCGGCGC CGGCCTGGTG
GTGTCGGAGA TGGTCACCAG CGATGTGCGC CTGTGGAACA GCCGCAAGTC CAGCCTGCGC
CTGCTGCATG CCGGCGACCC CGAGCCGCGC TCGGTGCAGA TCGCCGGTGG CGACCCGCAG
ATGCTCGCCG AGGCGGCGCG CAAGAACGTC GAGCTGGGCG CGCAGATCAT CGACATCAAC
ATGGGCTGCC CGGCCAAGAA GGTCTGCAAC AAGGCCGCCG GTTCCGCCCT GTTGCGTGAC
GAGCCGCTGG TGCGCGAGAT CCTCGAGGCG GTGGTCGCTG CGGTGGACGT ACCGGTGACC
CTGAAGATCC GCACCGGCTG GGACCGCCAG AACAAGAACG GCATCACCGT GGCGAAGATC
GCCGAAGATG CCGGCATCAC CGCCCTGGCC GTGCATGGCC GCACCCGCGC CGACCTCTAC
ACCGGCGAAG CCGAGTACGA CACCATCGCC GCCATCAAGC AGGCGGTATC GATTCCGGTG
TTCGCCAATG GCGACATCGA CTCCCCACAA AAAGCCAAGG CCGTGCTCGA CGCCACCGGC
GCCGATGCCT TGCTGATCGG TCGCGCCGCT CAGGGCCGAC CGTGGATCTT CCGTGAAATC
GAGCACTACC TGCGTACCGG TGAAATCCTC CCGGCGCCGA GCCTGCTCGA AGTGGAACGC
ATCCTGCTGG AACACCTGGC CGCACTGCAC GCCTTCTATG GCGACCTGAT GGGCGTACGC
ATCGCCCGCA AGCATGTCGG CTGGTATCTG GCAACCCTGC CGGGCGCCAG GGAGTTTCGC
GCCCAGTTCA ATCGTCTGGA CAGTACGGAC GCACAGTGCG CCCACGTTCG CGCGTTCTTT
CGCGAACGGC ACAACGATGG AAACGAGGTG GCCGCATGA
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| Protein sequence | MSAPRIGPYT LPNRLILAPM AGVTDRPFRQ LCRRLGAGLV VSEMVTSDVR LWNSRKSSLR
LLHAGDPEPR SVQIAGGDPQ MLAEAARKNV ELGAQIIDIN MGCPAKKVCN KAAGSALLRD
EPLVREILEA VVAAVDVPVT LKIRTGWDRQ NKNGITVAKI AEDAGITALA VHGRTRADLY
TGEAEYDTIA AIKQAVSIPV FANGDIDSPQ KAKAVLDATG ADALLIGRAA QGRPWIFREI
EHYLRTGEIL PAPSLLEVER ILLEHLAALH AFYGDLMGVR IARKHVGWYL ATLPGAREFR
AQFNRLDSTD AQCAHVRAFF RERHNDGNEV AA
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