| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0612 |
|---|
| Symbol | |
|---|
| ID | 5109574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 675407 |
|---|
| End bp | 676294 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640501823 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001186112 |
|---|
| Protein GI | 146305647 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.341398 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTGGA ACCTCGACCA GCTGCATCTG TTCGTGCGCA CCGCCGAATG TCGTTCCTTT
TCCGCGGTGG CGCGGGAAAC CGGGCGCGCG CAGTCGGCGG TCAGCACCGC CATCGCCCTG
CTCGAAACCG ATCTCGGCGT CACCCTGTTC GAGCGCAGCA GCGGACGCCA GCCGCGCCTG
ACCGAAGCGG GAACGGCGCT GCTCGAGGAA GCGCGCAGCG TGCTGCAGCA GTGCCAGCGC
CTGGATGGCC GCGCGCTGGG ACTGGCCCGT GGCGAGGAGG CACGCCTGCG CCTGGCGCAG
GATGAGGCCA TGCCCTACCA GCCGGTGCTG GCCAGCCTGG AGGCGCTGGC CAATGCCTTT
CCCCTGCTCG AGGTCCAGCT CTCCAGCGGC GCCCAGGGCG ACGTGGCGCG CAAGCTGCTG
CAGCACCAGG CGGATCTCGG CCTGCTGTTT CATCACGAGC AGATGCCGCG GGAACTGGAG
AGCCAGCGCC TGGGCACCAT CGAAATGGTC ACGGTGTGCA GCCCGCAGCA TCCGTTGGCG
CGGCTCGATT CGGTGGAACG ACGCAATCTG GCCGAGCATC GCCAACTGCT GATGACGCCG
CAGGACAGCC ACTATCCAGG CGGCGAGCAG ATCAGCCCGC TGGTGTGGCG CGCCGACAGC
TTCTACGTCA TGGCCGAGCT GGTGATCCGC AGCGTCGGCT GGGCCTGGCT GCCGCGTCAC
GTGGCGCAGT ACCCGACCTA TCAGGGCCAC CTGCAGGAAC TGCGCAGCGA CTGGGCACCG
CTGCCGCTGG TGGTGGAACT GGTATGGCGT CGCGACGGCG CCCTCGGCCC TGCGGCCAGC
TGGCTGGCCG ACTGCCTGGC GCAGGAGCTG CTGCGCCCGC AGACCTGA
|
|---|
| Protein sequence | MNWNLDQLHL FVRTAECRSF SAVARETGRA QSAVSTAIAL LETDLGVTLF ERSSGRQPRL
TEAGTALLEE ARSVLQQCQR LDGRALGLAR GEEARLRLAQ DEAMPYQPVL ASLEALANAF
PLLEVQLSSG AQGDVARKLL QHQADLGLLF HHEQMPRELE SQRLGTIEMV TVCSPQHPLA
RLDSVERRNL AEHRQLLMTP QDSHYPGGEQ ISPLVWRADS FYVMAELVIR SVGWAWLPRH
VAQYPTYQGH LQELRSDWAP LPLVVELVWR RDGALGPAAS WLADCLAQEL LRPQT
|
|---|
| |